View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16751_low_55 (Length: 327)
Name: NF16751_low_55
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_55 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 79 - 315
Target Start/End: Complemental strand, 24138734 - 24138498
Alignment:
| Q |
79 |
ccaggttttttacctgatcgggaaagggaaattaaacaagttataagtttatctgaaaattcctttaactttgttattacaggttatctgactgtgttct |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24138734 |
ccaggttttttacctgatcgggaaagggaaattaaacaagttataagtttatctgaaaattcctttaactttgttgttacaggttatctgactgtgttct |
24138635 |
T |
|
| Q |
179 |
gagattcttaccatgactggacaagttgacaaagtaaccctaagagttttggtggacaaggagaaaaacaaagttctgtttgctgaggcagataaggatt |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24138634 |
gagattcttaccatgactggacaagttgacaaagtaaccctaagagttttggtggacaaggagaaaaacaaagttctgtttactgaggcagataaggatt |
24138535 |
T |
|
| Q |
279 |
ttgttgatgttcttttgagtttcttaacattgccctt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24138534 |
ttgttgatgttcttttgagtttcttaacattaccctt |
24138498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 99 - 312
Target Start/End: Complemental strand, 24146460 - 24146235
Alignment:
| Q |
99 |
ggaaagggaaattaaacaagttataagtttatctgaaaattcctttaactttgttattacaggttatctgactgtgttctgagattcttaccatgactgg |
198 |
Q |
| |
|
|||||| | |||||||||||||||||| ||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24146460 |
ggaaagcgtaattaaacaagttataagcttatcaaaaaattcctttaaatttgttg---caggttatctgactgtgttctgagattcttaccatggctga |
24146364 |
T |
|
| Q |
199 |
a---------------caagttgacaaagtaaccctaagagttttggtggacaaggagaaaaacaaagttctgtttgctgaggcagataaggattttgtt |
283 |
Q |
| |
|
| ||||| |||||||| |||| |||||| ||||| |||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
24146363 |
aaattcctcagctgagcaagtcgacaaagtttcccttagagttgtggtgctgaaggagaaaaacaaagttctgtttgcagaggcaggaaaggattttgtt |
24146264 |
T |
|
| Q |
284 |
gatgttcttttgagtttcttaacattgcc |
312 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |
|
|
| T |
24146263 |
gatgttcttttgagcttcttatcattgcc |
24146235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 199 - 309
Target Start/End: Complemental strand, 24151339 - 24151229
Alignment:
| Q |
199 |
acaagttgacaaagtaaccctaagagttttggtggacaaggagaaaaacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagt |
298 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||| || || ||||||||||||||||| || |||||||| | |||||||||||||||| || || || |
|
|
| T |
24151339 |
acaagttgacaaagttaccttgagagttttggtcgataaagagaaaaacaaagttctattggctgaggctgggaaggattttgttgatgcactcttcagc |
24151240 |
T |
|
| Q |
299 |
ttcttaacatt |
309 |
Q |
| |
|
||||||||||| |
|
|
| T |
24151239 |
ttcttaacatt |
24151229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 199 - 312
Target Start/End: Complemental strand, 24132681 - 24132568
Alignment:
| Q |
199 |
acaagttgacaaagtaaccctaagagttttggtggacaaggagaaaaacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagt |
298 |
Q |
| |
|
||||| ||||||||| ||| | ||||||||||||||||| | || | ||||||| ||| |||||| |||| |||||||||||||||| |||||| || |
|
|
| T |
24132681 |
acaaggtgacaaagttaccttgagagttttggtggacaaacaaaagagcaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagc |
24132582 |
T |
|
| Q |
299 |
ttcttaacattgcc |
312 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
24132581 |
ttcttaacattgcc |
24132568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 306
Target Start/End: Complemental strand, 24122250 - 24122143
Alignment:
| Q |
199 |
acaagttgacaaagtaaccctaagagttttggtggacaaggagaaaaacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagt |
298 |
Q |
| |
|
||||| |||| |||| ||| | ||||| |||||||||| || | |||||||||| ||| |||||| |||| |||||||||||||||| |||||| || |
|
|
| T |
24122250 |
acaaggtgacgaagttaccttgagagtcatggtggacaaagaaataaacaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagc |
24122151 |
T |
|
| Q |
299 |
ttcttaac |
306 |
Q |
| |
|
|||||||| |
|
|
| T |
24122150 |
ttcttaac |
24122143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 312
Target Start/End: Complemental strand, 24154472 - 24154381
Alignment:
| Q |
221 |
agagttttggtggacaaggagaaaaacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagtttcttaacattgcc |
312 |
Q |
| |
|
||||||||||||||||| | || || |||||| | | |||||| ||||| |||||||| ||||||||||| || || |||||||||||||| |
|
|
| T |
24154472 |
agagttttggtggacaaagcgaggaaaaaagttgtttatgctgaagcagagaaggatttcgttgatgttctgttaagcttcttaacattgcc |
24154381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 24232719 - 24232632
Alignment:
| Q |
225 |
ttttggtggacaaggagaaaaacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagtttcttaacattgcc |
312 |
Q |
| |
|
||||||||||||| || || ||||||||| ||| ||||||||| | |||||||| ||||||| ||| || || |||||||||||||| |
|
|
| T |
24232719 |
ttttggtggacaaagaaaagaacaaagttgtgtatgctgaggctgggaaggatttcgttgatgctctcttcagcttcttaacattgcc |
24232632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 24238085 - 24238152
Alignment:
| Q |
245 |
aacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagtttcttaacattgcc |
312 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||||||||| |||| ||| || ||||||||||||||||| |
|
|
| T |
24238085 |
aacaaagttgtgtatgctgaggcaggcaaggattttgtcgatgctctcttcagtttcttaacattgcc |
24238152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 312
Target Start/End: Original strand, 21194258 - 21194368
Alignment:
| Q |
202 |
agttgacaaagtaaccctaagagttttggtggacaaggagaaaaacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagtttc |
301 |
Q |
| |
|
|||||||||||| || | || ||| |||||||||| || | ||||||||| ||| ||||||||||| ||||||||| |||| ||||| || || ||| |
|
|
| T |
21194258 |
agttgacaaagttacattgagggttatggtggacaaagaaaggaacaaagttttgtatgctgaggcagggaaggattttattgaagttctattcagcttc |
21194357 |
T |
|
| Q |
302 |
ttaacattgcc |
312 |
Q |
| |
|
||||||||||| |
|
|
| T |
21194358 |
ttaacattgcc |
21194368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 312
Target Start/End: Complemental strand, 3495049 - 3494936
Alignment:
| Q |
199 |
acaagttgacaaagtaaccctaagagttttggtggacaaggagaaaaacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagt |
298 |
Q |
| |
|
||||||||||||||| | | | ||||||| || ||||| || | ||| | |||||||| |||||| || | ||||||||| || |||||||| || ||| |
|
|
| T |
3495049 |
acaagttgacaaagttagcttgcgagttttagttgacaaagaaagaaatagagttctgtatgctgaagccggtaaggatttcgtcgatgttctctttagt |
3494950 |
T |
|
| Q |
299 |
ttcttaacattgcc |
312 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
3494949 |
ttcttaacattgcc |
3494936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 10988834 - 10988901
Alignment:
| Q |
245 |
aacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagtttcttaacattgcc |
312 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||||||||||| || || |||||||||||||| |
|
|
| T |
10988834 |
aacaaagttctgtatgctgaggcagtgaaggatttcgttgatgttctcttcagcttcttaacattgcc |
10988901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 309
Target Start/End: Original strand, 3151034 - 3151143
Alignment:
| Q |
199 |
acaagttgacaaagtaaccctaagagttttggtggacaaggagaaaaacaaagttctgtttgctgaggcagataaggattttgttgatgttcttttgagt |
298 |
Q |
| |
|
||||||||||||||| | | | ||| || |||||||||| || | ||||| ||||| | ||||||||| | |||||||| || ||||||||||||||| |
|
|
| T |
3151034 |
acaagttgacaaagttagcttgagaattatggtggacaaagaaaggaacaa-gttctatatgctgaggctgggaaggatttcgtcgatgttcttttgagt |
3151132 |
T |
|
| Q |
299 |
ttcttaacatt |
309 |
Q |
| |
|
|| |||||||| |
|
|
| T |
3151133 |
tttttaacatt |
3151143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University