View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_58 (Length: 320)
Name: NF16751_low_58
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 8152910 - 8153162
Alignment:
| Q |
1 |
tatgatgattttgatgttcaactgacctttccagagttaataaaagagaaatgcccttagggaaaaatggaaattttatcttggaatttatgtattatat |
100 |
Q |
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| T |
8152910 |
tatgatgattttgatgttcaactgacctttccagagttaataaaagagaaatgcctttagggaaaaatggaaattttatcttggaatttatgtattcaat |
8153009 |
T |
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| Q |
101 |
taaagatattgaaactttaaaaaacaacnnnnnnnnaacatgaaa---attatcaattgattttatttttaaatcctaaacaaatgtctttataacag-t |
196 |
Q |
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| T |
8153010 |
-----atattgaaacttcaaaaaacaacttttttcctacatgaaaaatattatcaattgattttatttttaaatactaaacaagtgtctttataacggtt |
8153104 |
T |
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| Q |
197 |
tgttagcaaaacccttaataaaatggtgtgattttggagtgtaaatctaagttaaaaa |
254 |
Q |
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| T |
8153105 |
tgttagcaaaacccttaataaaatggtgtgattttggagtgtaaatctaagttaaaaa |
8153162 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 8616804 - 8616763
Alignment:
| Q |
138 |
acatgaaaattatcaattgattttatttttaaatcctaaaca |
179 |
Q |
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| T |
8616804 |
acatgaaatttatcaattgattttatttttaaatccttaaca |
8616763 |
T |
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