View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16751_low_60 (Length: 313)
Name: NF16751_low_60
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_60 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 12 - 297
Target Start/End: Original strand, 36535430 - 36535715
Alignment:
| Q |
12 |
acagaatggaggcagcaacaaggagagaaagagcgctggcttatgctttctcacaacaggtaaatagcaaaagctatttcaatatgcaaaataataaagt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36535430 |
acagaatggaggcagcaacaaggagagaaagagcactggcttatgctttctcacaacaggtaagtagcaaaagctatttcaatatgcaaaataataaagc |
36535529 |
T |
|
| Q |
112 |
gaatcattgatttagtctctaaaacggttcatgaggcgttaacttagtcgtaagagtttgacatagtaaacggttgtaaaatactaatcctcgttgttgc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36535530 |
gaatcattgatttagtctctaaaacggttcatgaggcgttaacttagtcgtaagagtttgacatagtaaacggttgtaaaatactaatcctcgttgttgc |
36535629 |
T |
|
| Q |
212 |
agctacgaatatgttcgaagagaaaattagcaaaacataacaacatggaacaaaatatgagttggagttggcttgaaagatggatg |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36535630 |
agctacgaatatgttcgaagagaaaattagcaaaacataacaacagggaacaaaatatgagttggagttggcttgaaagatggatg |
36535715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University