View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16751_low_63 (Length: 299)

Name: NF16751_low_63
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16751_low_63
NF16751_low_63
[»] chr4 (1 HSPs)
chr4 (1-289)||(32550204-32550492)


Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 32550492 - 32550204
Alignment:
Q  1 aaaccctgagccgtggtcttgagactgtgttgaaatcctccaattgcaattattccgggttcaagatctctctgtattaagggaggattggtgggaaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32550492 aaaccctgagccgtggtcttgagactgtgttgaaatcctccaattgcaattattccgggttcaagatctctctgtattaagggaggattggtgggaaaga 32550393  T
Q  101 aacaccgtcctaaagaaactgtgcgccttgccggattctccttcaccactaagtccattccctgcaaaatatccctcggaatggaatacacattgccact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32550392 aacaccgtcctaaagaaactgtgcgccttgccggattctccttcaccactaagtccattccctgcaaaatatccctcggaatggaatacacattgccact 32550293  T
Q  201 aaggtaatctctcaacttacgaagctcgagtttgttcaccagtgttatagtaaccgtataagaaacagctctttcatcttctccctttg 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32550292 aaggtaatctctcaacttacgaagctcgagtttgttcaccagtgttatagtaaccgtataagaaacagctctttcatcttctccttttg 32550204  T

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