View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_65 (Length: 286)
Name: NF16751_low_65
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_65 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 269
Target Start/End: Complemental strand, 10484902 - 10484638
Alignment:
| Q |
6 |
agtgagatgaatgaaagaccatgatgccttnnnnnnnnncctcagccacagtgttta-tgtttttagtggatacccttttgattatatgttttgctactt |
104 |
Q |
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| T |
10484902 |
agtgacatgaatgaaagaccatgatgccctaaaaaaaaacctcagccacagtgtttaatgtttttagtggatactcttttgattatatgttttgctactt |
10484803 |
T |
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| Q |
105 |
gaggtatccactatcaccagaacctccaccatcatttgtcctattgaccctgtagttactatgttcaacaatggacaccctttttctgatgttctttcaa |
204 |
Q |
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| T |
10484802 |
gaggtatccactatcaccagaacctccaccatcatttgtcctattgaccctgtagttactatgttcaacaatggacaccctttttctgatgttctttcaa |
10484703 |
T |
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| Q |
205 |
aaatatgatacattgttttactattgcacgtgcatcactcccttgggcctacaaaagacaaaagt |
269 |
Q |
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| T |
10484702 |
aaatatgatacattgttttactattgcacgtgcatcactcccttgggcctacaaaagacaaaagt |
10484638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 62 - 239
Target Start/End: Original strand, 4951046 - 4951235
Alignment:
| Q |
62 |
atgtttttagtggatacccttttgatt----atatgttttgctacttgaggtatccact------atcaccagaacctccaccatcatttgtcctattga |
151 |
Q |
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| T |
4951046 |
atgtttttagtggatacccttttgattcattatatgttttgctacttgaggtatccactatcactatcaccagaacctccaccatcatttgtcatattgg |
4951145 |
T |
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| Q |
152 |
ccct---gtagttactatgttcaacaatggacaccctttttctgatgttctttcaaaa-atatgatacattgttttactattgcacgtgcat |
239 |
Q |
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| T |
4951146 |
ccctgtagtagttactcttttcaacaatggacaccctttt--ggatgttctttcaaaacatatgatacattgttttactattgcacgtgcat |
4951235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 223815 - 223735
Alignment:
| Q |
62 |
atgtttttagtggatacccttttgattatatgttttgctacttgaggtatccactatcaccagaacctccaccatcatttg |
142 |
Q |
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| T |
223815 |
atgtttttagtggatacacttttgattgtatgttttgctacttgaggtatccactatcaccaaaacctccaccatcatttg |
223735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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