View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16751_low_67 (Length: 283)

Name: NF16751_low_67
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16751_low_67
NF16751_low_67
[»] chr3 (2 HSPs)
chr3 (148-283)||(27744806-27744941)
chr3 (9-75)||(27745013-27745079)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 148 - 283
Target Start/End: Complemental strand, 27744941 - 27744806
Alignment:
Q  148 tgttgtgtagttaaatacttaacttgtggctaagtgatttaatatcatttgtgaaagccttaagcatgggtgtttgagaagatccttggtattctctgat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27744941 tgttgtgtagttaaatacttaacttgtggctaagtgatttaatatcatttgtgaaagccttaagcatgggtgtttgagaagatccttggtattctctgat 27744842  T
Q  248 ttggaaggtcaccataggcaagctctctttttctct 283  Q
    |||||||||||||||||||| |||||||||||||||    
T  27744841 ttggaaggtcaccataggcatgctctctttttctct 27744806  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 27745079 - 27745013
Alignment:
Q  9 gatatgaagaatcggtttgggtgtatgcacgaggcaaattgaacaatcagtaaaaatagccataatg 75  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27745079 gataagaagaatcggtctgggtgtatgcacgaggcaaattgaacaatcagtaaaagtagccataatg 27745013  T

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