View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_69 (Length: 275)
Name: NF16751_low_69
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 3016176 - 3016286
Alignment:
| Q |
18 |
aaacacggtatacttacgacacatttttaatgacacgatgttgaataagtgtcaaagaatttgtatctataacatagttataaacaaaaaattatacaaa |
117 |
Q |
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| T |
3016176 |
aaacacggtatacttacgacacatttttaatgacacgatgttgaataagtgtcaaagaatttgtatctataacatagttataaacaaaaaattatacaaa |
3016275 |
T |
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| Q |
118 |
tttgagtatat |
128 |
Q |
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| T |
3016276 |
tttgagtatat |
3016286 |
T |
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Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 220 - 266
Target Start/End: Original strand, 3016388 - 3016434
Alignment:
| Q |
220 |
ttcgtaaatgtttacgcaattgaacctaatttacttcacatttcatc |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016388 |
ttcgtaaatgtttacgcaattgaacctaatttacttcacatttcatc |
3016434 |
T |
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