View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_7 (Length: 676)
Name: NF16751_low_7
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 236 - 660
Target Start/End: Complemental strand, 17110266 - 17109831
Alignment:
| Q |
236 |
tcattttaaagtgggtccagttcaagtaaatactatttgaatataaatctgcaccacttgatatgagatataccaaaagaaaacatgtaaatagtaggta |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17110266 |
tcattttaaagtgggtccagttcaagtaaatactatttgaatataaatctgcaccacttgatatgagatataccaaaagaaaacatgtaaatagtaggta |
17110167 |
T |
|
| Q |
336 |
cctgagtaattgttgggcactatgactgttggtccctctcaggatcgtcaatcattatacattgaatatgcgcaatcct-----------ttccataagg |
424 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
17110166 |
cctgagtaattgttgggcactatgactgttggtccctctcaggatcgtcaatcattatacattgaatatgcgcaatcctctcgcaatcctttccataagg |
17110067 |
T |
|
| Q |
425 |
tttcttgcatctttctaaaaggaatggacagttccccaaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttggga |
524 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17110066 |
tttcttgcatctttctaaaaggaatggacagttccccgaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttggga |
17109967 |
T |
|
| Q |
525 |
cagtttttaagagttaatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggtaa |
624 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109966 |
cagtttttaagagttaatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggtaa |
17109867 |
T |
|
| Q |
625 |
gagagagtggaatcaacccttgattgggaaaagact |
660 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
17109866 |
gagagagtggaatcaacccttgattgggaaaagact |
17109831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 17110509 - 17110288
Alignment:
| Q |
16 |
cacagatcagatagtgttagaacagcaactctagtccaaaagattaaagataggaaaaaacgcaaacaatgaacacacgaagtttggtaactaattaagc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17110509 |
cacagatcagatagtgttagaacagcaactctagtccaaaagattaaagataggaaaaaacgcaaacaatgaacacacgacgtttggtaactaattaagc |
17110410 |
T |
|
| Q |
116 |
tcggccaattgtgtgtacgtctccaactgtattgatttatattattacccacttgggatttacagggtacaaatttgtatttaaacactgcatttcagat |
215 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17110409 |
tcggccaattgcgtgtacgtctccaactgtattgatttatattattacccacttaggatttacagggtacaaatttgtatttaaacactgcatttcagat |
17110310 |
T |
|
| Q |
216 |
tacaacataaatcccactgatc |
237 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
17110309 |
tacaacataaatcccactgatc |
17110288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 423 - 660
Target Start/End: Complemental strand, 17030608 - 17030371
Alignment:
| Q |
423 |
ggtttcttgcatctttctaaaaggaatggacagttccccaaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttgg |
522 |
Q |
| |
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||||||||||||| || | ||| | || ||| |||||||| || |||| |||||| |||||| |||| ||||||||||| || || | || ||||||| |
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| T |
17030608 |
ggtttcttgcatcgttgtttaagcagtgaacaattccccaatatttgtagagttgaaatggatttaggaagaccctcctttggcaagcattggatgttgg |
17030509 |
T |
|
| Q |
523 |
gacagtttttaagagttaatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggt |
622 |
Q |
| |
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|||| || || ||| | |||| | ||||||||| |||| || |||||||||||||||||||||||||||||| |||||||| |||||||||| || |
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|
| T |
17030508 |
gacaattatttagactcaatgttctaagagagggaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacggatatttagataagt |
17030409 |
T |
|
| Q |
623 |
aagagagagtggaatcaacccttgattgggaaaagact |
660 |
Q |
| |
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||||||||| |||| |||||||||||| |||||||||| |
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| T |
17030408 |
aagagagaggggaagcaacccttgattaggaaaagact |
17030371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 423 - 660
Target Start/End: Complemental strand, 17048946 - 17048709
Alignment:
| Q |
423 |
ggtttcttgcatctttctaaaaggaatggacagttccccaaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttgg |
522 |
Q |
| |
|
||||||||||||| || | ||| | || ||| |||||||| || |||| |||||| |||||| |||| ||||||||||| || || | || ||||||| |
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| T |
17048946 |
ggtttcttgcatcgttgtttaagcagtgaacaattccccaatatttgtagagttgaaatggatttaggaagaccctcctttggcaagcattggatgttgg |
17048847 |
T |
|
| Q |
523 |
gacagtttttaagagttaatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggt |
622 |
Q |
| |
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|||| || || ||| | |||| | ||||||||| |||| || |||||||||||||||||||||||||||||| |||||||| |||||||||| || |
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| T |
17048846 |
gacaattatttagactcaatgttctaagagagggaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacggatatttagataagt |
17048747 |
T |
|
| Q |
623 |
aagagagagtggaatcaacccttgattgggaaaagact |
660 |
Q |
| |
|
||||||||| |||| |||||||||||| |||||||||| |
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| T |
17048746 |
aagagagaggggaagcaacccttgattaggaaaagact |
17048709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 423 - 656
Target Start/End: Complemental strand, 16978736 - 16978503
Alignment:
| Q |
423 |
ggtttcttgcatctttctaaaaggaatggacagttccccaaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttgg |
522 |
Q |
| |
|
||||||||||||| || | ||| | || ||| |||||||| || |||| |||||| |||||| |||| ||||||||||| || || | || ||||||| |
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| T |
16978736 |
ggtttcttgcatcgttgtttaagcagtgaacaattccccaatatttgtagagttgaaatggatttaggcagaccctcctttggcaagcattggatgttgg |
16978637 |
T |
|
| Q |
523 |
gacagtttttaagagttaatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggt |
622 |
Q |
| |
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|||| || || ||| | |||| | ||||||||| |||| || |||||||||||||||||||||||||||||| |||||||| ||||||||| || |
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| T |
16978636 |
gacaattatttagactcaatgttctaagagagggaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacaaatatttagataagt |
16978537 |
T |
|
| Q |
623 |
aagagagagtggaatcaacccttgattgggaaaa |
656 |
Q |
| |
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|||||||| |||| |||||||||||| |||||| |
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|
| T |
16978536 |
aagagagataggaagcaacccttgattaggaaaa |
16978503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 17126221 - 17126147
Alignment:
| Q |
17 |
acagatcagatagtgttagaacagcaactctagtccaaaagattaaagataggaaaaaacgcaaacaatgaacaca |
92 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| ||||||| |||| || ||||||||||||||||||||||| |
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|
| T |
17126221 |
acagatcagatagtgttagaacatcaaccctagttcaaaagagtaaaaat-tcaaaaaacgcaaacaatgaacaca |
17126147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 35052265 - 35052192
Alignment:
| Q |
30 |
tgttagaacagcaactctagtccaaaagattaaagataggaaaaaacgcaaacaatgaacacacgaagtttggtaa |
105 |
Q |
| |
|
|||||||||||||| || || ||||||| |||||||| |||||| ||||||||||||||||||| ||||||||| |
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|
| T |
35052265 |
tgttagaacagcaa-tccggttcaaaagaataaagatacgaaaaa-cgcaaacaatgaacacacgttgtttggtaa |
35052192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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