View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16751_low_74 (Length: 255)

Name: NF16751_low_74
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16751_low_74
NF16751_low_74
[»] chr7 (16 HSPs)
chr7 (1-237)||(26186627-26186863)
chr7 (1-236)||(26088168-26088396)
chr7 (1-236)||(26111956-26112184)
chr7 (1-236)||(26128953-26129181)
chr7 (1-204)||(19103080-19103276)
chr7 (1-210)||(26155600-26155802)
chr7 (1-221)||(26191666-26191879)
chr7 (54-236)||(26179469-26179651)
chr7 (54-185)||(26251285-26251416)
chr7 (54-189)||(26242833-26242968)
chr7 (55-187)||(26302244-26302376)
chr7 (54-189)||(26297881-26298016)
chr7 (54-104)||(26278217-26278267)
chr7 (52-187)||(26204320-26204455)
chr7 (52-187)||(26223958-26224093)
chr7 (52-110)||(26227484-26227542)
[»] chr4 (1 HSPs)
chr4 (50-237)||(44903635-44903825)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 26186863 - 26186627
Alignment:
Q  1 cttgtaggaaagtgttttcactctcatctctttcctttttccttacaagttacaacccagataaaattatgatctgaattttcaagaccgtgtgcaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26186863 cttgtaggaaagtgttttcactctcatctctttcctttttccttataagttacaacccagataaaattatgatctgaattttcaagaccgtgtgcaattt 26186764  T
Q  101 ctacgatctgatcattatcaagcctagttacacttccaaaacttaaatacagtacggactcaatttgctttgagttaagccaatttagccactcttcctc 200  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26186763 ctacaatctgagcattatcaagcctagttacacttccaaaacttaaatacagtacggactcaatttgctttgagttaagccaatttagccactcttcctc 26186664  T
Q  201 ttttgcaagctcctccatgtgtcccctattgcccttc 237  Q
    || ||||||||||||||||||||||||||| ||||||    
T  26186663 ttctgcaagctcctccatgtgtcccctattacccttc 26186627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 26088396 - 26088168
Alignment:
Q  1 cttgtaggaaagtgttttcactctcatctctttcctttttccttacaagttacaacccagataaaattatgatctgaattttcaagaccgtgtgcaattt 100  Q
    |||| ||||||||||||||||||||||| || || | |||||||||||       ||||||||||||||||| |||||||||| ||||||||||||||||    
T  26088396 cttgaaggaaagtgttttcactctcatccctctcatatttccttacaa-------cccagataaaattatgacctgaattttcgagaccgtgtgcaattt 26088304  T
Q  101 ctacgatctgatcattatcaagcctagttacacttccaaaacttaaatacagtacggactcaatttgctttgagttaagccaatttagccactcttcctc 200  Q
    |||| |||||| |||||||||||||| ||| |||||||||||||| ||||| |||||||||| ||| |||||||||||||||||||||||||||||||||    
T  26088303 ctacaatctgagcattatcaagcctaattagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcctc 26088204  T
Q  201 ttttgcaagctcctccatgtgtcccctattgccctt 236  Q
    |||| |||||||||| ||||||||||||||| ||||    
T  26088203 ttttccaagctcctctatgtgtcccctattggcctt 26088168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 26112184 - 26111956
Alignment:
Q  1 cttgtaggaaagtgttttcactctcatctctttcctttttccttacaagttacaacccagataaaattatgatctgaattttcaagaccgtgtgcaattt 100  Q
    |||| ||||||||||||||||||||||| || || | |||||||||||       ||||||||||||||||| |||||||||| ||||||||||||||||    
T  26112184 cttgaaggaaagtgttttcactctcatccctctcatatttccttacaa-------cccagataaaattatgacctgaattttcgagaccgtgtgcaattt 26112092  T
Q  101 ctacgatctgatcattatcaagcctagttacacttccaaaacttaaatacagtacggactcaatttgctttgagttaagccaatttagccactcttcctc 200  Q
    |||| |||||| |||||||||||||| ||| |||||||||||||| ||||| |||||||||| ||| |||||||||||||||||||||||||||||||||    
T  26112091 ctacaatctgagcattatcaagcctaattagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcctc 26111992  T
Q  201 ttttgcaagctcctccatgtgtcccctattgccctt 236  Q
    |||| |||||||||| ||||||||||||||| ||||    
T  26111991 ttttccaagctcctctatgtgtcccctattggcctt 26111956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 26129181 - 26128953
Alignment:
Q  1 cttgtaggaaagtgttttcactctcatctctttcctttttccttacaagttacaacccagataaaattatgatctgaattttcaagaccgtgtgcaattt 100  Q
    |||| |||||| |||||||||||||||| || ||||||||||||||||       |||| |||||||||||| |||||||||| ||||||||||||||||    
T  26129181 cttgaaggaaattgttttcactctcatcgctctcctttttccttacaa-------cccatataaaattatgacctgaattttcgagaccgtgtgcaattt 26129089  T
Q  101 ctacgatctgatcattatcaagcctagttacacttccaaaacttaaatacagtacggactcaatttgctttgagttaagccaatttagccactcttcctc 200  Q
    |||| |||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||    
T  26129088 ctacaatctgagcattatcaagcctagttagacttccaaaacttacatacagtacggactcattttgctttgagttaagccaatttaaccagtctgcctc 26128989  T
Q  201 ttttgcaagctcctccatgtgtcccctattgccctt 236  Q
    |||| |||||||||| |||||||||||||| |||||    
T  26128988 ttttccaagctcctctatgtgtcccctattcccctt 26128953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 19103080 - 19103276
Alignment:
Q  1 cttgtaggaaagtgttttcactctcatctctttcctttttccttacaagttacaacccagataaaattatgatctgaattttcaagaccgtgtgcaattt 100  Q
    ||||||| ||| ||||||||||||||||||| || |||||||||||       ||||||||||||||||||| |||||||||||||||||||||| ||||    
T  19103080 cttgtagaaaactgttttcactctcatctctctcatttttccttac-------aacccagataaaattatgacctgaattttcaagaccgtgtgcgattt 19103172  T
Q  101 ctacgatctgatcattatcaagcctagttacacttccaaaacttaaatacagtacggactcaatttgctttgagttaagccaatttagccactcttcctc 200  Q
    |||| ||||||||||| ||||||||||||| |||||||||||||| ||||| ||| |||||| |||||||||||||||||||||||||||||||||||||    
T  19103173 ctacaatctgatcattttcaagcctagttagacttccaaaacttacatacaatacagactcattttgctttgagttaagccaatttagccactcttcctc 19103272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 26155802 - 26155600
Alignment:
Q  1 cttgtaggaaagtgttttcactctcatctctttcctttttccttacaagttacaacccagataaaattatgatctgaattttcaagaccgtgtgcaattt 100  Q
    |||| ||||||||||||||||||||||| || ||||||||||||||||       ||||||||||||||||| |||||||||| ||||||||||||||||    
T  26155802 cttgaaggaaagtgttttcactctcatcgctctcctttttccttacaa-------cccagataaaattatgacctgaattttcgagaccgtgtgcaattt 26155710  T
Q  101 ctacgatctgatcattatcaagcctagttacacttccaaaacttaaatacagtacggactcaatttgctttgagttaagccaatttagccactcttcctc 200  Q
    |||| |||||| |||||||||||||||||| |||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||| ||||||  ||||    
T  26155709 ctacaatctgagcattatcaagcctagttagacttccaaaacttacatacaatacggactcattttgctttgtgttaagccaatttaaccactcggcctc 26155610  T
Q  201 ttttgcaagc 210  Q
    |||| |||||    
T  26155609 ttttccaagc 26155600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26191879 - 26191666
Alignment:
Q  1 cttgtaggaaagtgttttcactctcatctctttcctttttccttacaagttacaacccagataaaattatgatctgaattttcaagaccgtgtgcaattt 100  Q
    ||||||||||| ||||||||||||||||  | || |||||||||||||       ||||||||||||||||| ||||||||||||| || ||||||||||    
T  26191879 cttgtaggaaactgttttcactctcatccatatcatttttccttacaa-------cccagataaaattatgacctgaattttcaagcccatgtgcaattt 26191787  T
Q  101 ctacgatctgatcattatcaagcctagttacacttccaaaacttaaatacagtacggactcaatttgctttgagttaagccaatttagccactcttcctc 200  Q
    |||| | |||| ||| |   |||||||||| ||||||||| |||| ||| ||||| |||||| |||||||||||||||||||||||||||||||| || |    
T  26191786 ctacaagctgagcatgagttagcctagttaaacttccaaagcttacataaagtacagactcattttgctttgagttaagccaatttagccactctgccac 26191687  T
Q  201 ttttgcaagctcctccatgtg 221  Q
    |||| ||  |||||| |||||    
T  26191686 ttttccattctcctctatgtg 26191666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 236
Target Start/End: Complemental strand, 26179651 - 26179469
Alignment:
Q  54 aacccagataaaattatgatctgaattttcaagaccgtgtgcaatttctacgatctgatcattatcaagcctagttacacttccaaaacttaaatacagt 153  Q
    ||||||||||||||| ||| |||| |||||||| ||||| ||||||||||| | |||| |||    || ||||   |  || |||||||||| ||| | |    
T  26179651 aacccagataaaattttgacctgagttttcaagcccgtgcgcaatttctacaagctgagcatgcggaaacctaacaaggctaccaaaacttacatataat 26179552  T
Q  154 acggactcaatttgctttgagttaagccaatttagccactcttcctcttttgcaagctcctccatgtgtcccctattgccctt 236  Q
    || |||||| |||||||||||||||||||||||||||| |||||||||||| |||| ||||| ||||||||||| ||| ||||    
T  26179551 acagactcattttgctttgagttaagccaatttagccattcttcctcttttccaagttcctctatgtgtccccttttggcctt 26179469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 185
Target Start/End: Complemental strand, 26251416 - 26251285
Alignment:
Q  54 aacccagataaaattatgatctgaattttcaagaccgtgtgcaatttctacgatctgatcattatcaagcctagttacacttccaaaacttaaatacagt 153  Q
    ||||||||||||||||||| ||||||||||||| || |||||||||||||| | |||| ||| |  ||||||||| |  || |||||||||| ||||| |    
T  26251416 aacccagataaaattatgacctgaattttcaagcccatgtgcaatttctacaagctgagcatgaggaagcctagtaaggctgccaaaacttacatacaat 26251317  T
Q  154 acggactcaatttgctttgagttaagccaatt 185  Q
    || |||||| ||||||| ||||||||||||||    
T  26251316 actgactcattttgcttcgagttaagccaatt 26251285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 189
Target Start/End: Complemental strand, 26242968 - 26242833
Alignment:
Q  54 aacccagataaaattatgatctgaattttcaagaccgtgtgcaatttctacgatctgatcattatcaagcctagttacacttccaaaacttaaatacagt 153  Q
    ||||||||||||||||||| ||||||||||||| ||||| ||||||||||| | |||| ||| |  || ||||||    || |||||||||| ||||| |    
T  26242968 aacccagataaaattatgacctgaattttcaagcccgtgagcaatttctacaagctgagcatgaggaaacctagtctggctgccaaaacttacatacaat 26242869  T
Q  154 acggactcaatttgctttgagttaagccaatttagc 189  Q
    || |||||| |||||||   ||||||||||||||||    
T  26242868 acagactcattttgcttcaggttaagccaatttagc 26242833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 187
Target Start/End: Complemental strand, 26302376 - 26302244
Alignment:
Q  55 acccagataaaattatgatctgaattttcaagaccgtgtgcaatttctacgatctgatcattatcaagcctagttacacttccaaaacttaaatacagta 154  Q
    ||||| |||||| ||||| ||||||||||||| ||||||||||||||||| | |||| ||| |  | ||| |   |  || |||||||||| ||||| ||    
T  26302376 acccaaataaaactatgacctgaattttcaagcccgtgtgcaatttctacaagctgagcatgaggatgccaaacaaggctgccaaaacttacatacaata 26302277  T
Q  155 cggactcaatttgctttgagttaagccaattta 187  Q
    | |||||| ||||||||||||||||||||||||    
T  26302276 cagactcattttgctttgagttaagccaattta 26302244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 189
Target Start/End: Complemental strand, 26298016 - 26297881
Alignment:
Q  54 aacccagataaaattatgatctgaattttcaagaccgtgtgcaatttctacgatctgatcattatcaagcctagttacacttccaaaacttaaatacagt 153  Q
    ||||||||||||||||||| ||||||||||||| || ||  |||||||||| | |||| ||| |  ||||||||| |  || |||||||||| ||||| |    
T  26298016 aacccagataaaattatgacctgaattttcaagcccatgaacaatttctacaagctgagcataaggaagcctagtaaagctgccaaaacttacatacaat 26297917  T
Q  154 acggactcaatttgctttgagttaagccaatttagc 189  Q
    || || ||| ||| ||| || |||||||||||||||    
T  26297916 acagattcattttccttcgaattaagccaatttagc 26297881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 26278267 - 26278217
Alignment:
Q  54 aacccagataaaattatgatctgaattttcaagaccgtgtgcaatttctac 104  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  26278267 aacccagataaaattatgacctgaattttcaagcccgtgtgcaatttctac 26278217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 26204455 - 26204320
Alignment:
Q  52 acaacccagataaaattatgatctgaattttcaagaccgtgtgcaatttctacgatctgatcattatcaagcctagttacacttccaaaacttaaataca 151  Q
    |||||||| || ||||||||| | |||||||||||||| || || |||||  | ||||| |||| |  ||||||||| |  ||||||||||||| |||||    
T  26204455 acaacccaaatgaaattatgaccagaattttcaagaccatgagctatttcagcaatctgttcatgagaaagcctagtaaggcttccaaaacttacataca 26204356  T
Q  152 gtacggactcaatttgctttgagttaagccaattta 187  Q
      || |||||  ||| ||| || |||||||||||||    
T  26204355 acacagactcgttttccttagaattaagccaattta 26204320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 26224093 - 26223958
Alignment:
Q  52 acaacccagataaaattatgatctgaattttcaagaccgtgtgcaatttctacgatctgatcattatcaagcctagttacacttccaaaacttaaataca 151  Q
    |||||||| || ||||||||| | |||||||||||||| || || |||||  | ||||| |||| |  ||||||||| |  ||||||||||||| |||||    
T  26224093 acaacccaaatgaaattatgaccagaattttcaagaccatgagctatttcagcaatctgttcatgagaaagcctagtaaggcttccaaaacttacataca 26223994  T
Q  152 gtacggactcaatttgctttgagttaagccaattta 187  Q
      || |||||  ||| ||| || |||||||||||||    
T  26223993 acacagactcgttttccttagaattaagccaattta 26223958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 26227542 - 26227484
Alignment:
Q  52 acaacccagataaaattatgatctgaattttcaagaccgtgtgcaatttctacgatctg 110  Q
    |||||||| || ||||||||| |||||||||||||||| || || |||||||| |||||    
T  26227542 acaacccaaatgaaattatgacctgaattttcaagaccatgagctatttctacaatctg 26227484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 44903825 - 44903635
Alignment:
Q  50 ttacaacccagataaaattatgatctgaattttcaagaccgtgtgcaatttctacgatctgatcattatcaagcctagttacacttccaaaacttaaata 149  Q
    ||||||||||||||||||||||| |||| |||||||| || |||||||||||||| | |||| ||| |  |||| |||| |  ||||||||||||| |||    
T  44903825 ttacaacccagataaaattatgacctgacttttcaagcccatgtgcaatttctacaagctgagcatgaaaaagcttagtaaggcttccaaaacttacata 44903726  T
Q  150 cagtacggactcaatttgctttgagttaagccaatttagccactcttcctcttttgcaa---gctcctccatgtgtcccctattgcccttc 237  Q
    ||  || |||||| |||||||||||||||||||||||||| | |||  ||||||| |||    || ||||| |||||||||||||||||||    
T  44903725 caacacagactcattttgctttgagttaagccaatttagcaattctctctctttttcaacgttcttctccacgtgtcccctattgcccttc 44903635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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