View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16751_low_75 (Length: 254)

Name: NF16751_low_75
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16751_low_75
NF16751_low_75
[»] chr3 (6 HSPs)
chr3 (15-254)||(6068785-6069024)
chr3 (31-253)||(6091399-6091623)
chr3 (31-243)||(6080328-6080542)
chr3 (31-209)||(6113177-6113357)
chr3 (31-253)||(6120025-6120249)
chr3 (53-253)||(6073299-6073499)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 6069024 - 6068785
Alignment:
Q  15 aaaatgaatacatgatatagattatgtaatattctaaaacttttgtttactctcttggttctttcactaaatacaaaatcacttgggattaagttctact 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6069024 aaaatgaatacatgatatagattatgtaatattctaaaacttttgtttactctcttggttctttcactaaatacaaaatcatttgggattaagttctact 6068925  T
Q  115 tgcaactccggtctaccacacctacaaagtctgctgatacacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaaacatt 214  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6068924 tgcaactccggtctaccacacctacaaagtcttccgatacacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaaacatt 6068825  T
Q  215 ttctattaccactcgcttcaatgaaaaaagagaataaaag 254  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  6068824 ttctattaccacccgcttcaatgaaaaaagagaataaaag 6068785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 31 - 253
Target Start/End: Original strand, 6091399 - 6091623
Alignment:
Q  31 atagattatgtaatattctaaaa--cttttgtttactctcttggttctttcactaaatacaaaatcacttgggattaagttctacttgcaactccggtct 128  Q
    |||||||||||||||||||||||  ||||||| | || ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  6091399 atagattatgtaatattctaaaagacttttgtgtcctgtcttggttctttcactaaatacaaaatcactagggattaagttgtacttgcaactccggtct 6091498  T
Q  129 accacacctacaaagtctgctgatacacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaaacattt-tctattaccact 227  Q
    || |||||| || || ||  ||||||||||| |  ||||| ||||||||||||||  |||||||||||||||||||||||| ||||| ||| |||||||     
T  6091499 acgacacctgcagagcctattgatacacttcgcaaccaaagaagatgggcacatatgttttggacaatcagaatctctaaagcatttatct-ttaccacc 6091597  T
Q  228 cgcttcaatgaaaaaagagaataaaa 253  Q
    | ||||||||||||||||||||||||    
T  6091598 cccttcaatgaaaaaagagaataaaa 6091623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 31 - 243
Target Start/End: Original strand, 6080328 - 6080542
Alignment:
Q  31 atagattatgtaatattctaaa-actttt-gtttactctcttggttctttcactaaatacaaaatcacttgggattaagttctacttgcaactccggtct 128  Q
    |||||||||||||||||||||| |||||| ||  |||||||||  |||||||||||||||||||||| ||||||||||||  |||||||||| | |||||    
T  6080328 atagattatgtaatattctaaagactttttgtgcactctcttgactctttcactaaatacaaaatcaattgggattaagtcttacttgcaaccctggtct 6080427  T
Q  129 accacacctacaaagtctgctgatacacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaaacattttctattaccactc 228  Q
    | ||||| |||||   || |||| |||||||||| ||||||| ||||| ||||||  |||||||||||||||||||||||||||| |||||||||||| |    
T  6080428 aacacacttacaattacttctgagacacttcacgaccaaataggatggacacatattttttggacaatcagaatctctaaaacatcttctattaccaccc 6080527  T
Q  229 gcttcaatgaaaaaa 243  Q
    |||| ||| ||||||    
T  6080528 gctttaataaaaaaa 6080542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 31 - 209
Target Start/End: Complemental strand, 6113357 - 6113177
Alignment:
Q  31 atagattatgtaatattctaaaa--cttttgtttactctcttggttctttcactaaatacaaaatcacttgggattaagttctacttgcaactccggtct 128  Q
    |||||||| ||||||||||||||  ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |    
T  6113357 atagattaggtaatattctaaaagacttttgtgtattctcttggttctttcactaaatacaaaatcacttgggattaagttgtacttgcaaccccggttt 6113258  T
Q  129 accacacctacaaagtctgctgatacacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaa 209  Q
    || |||||| ||  |  |  ||| |||||||    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  6113257 acgacacctgcagtgctttttgaaacacttcgtaaccaaataagatgggcacataacttttggacaatcagaatctctaaa 6113177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 31 - 253
Target Start/End: Complemental strand, 6120249 - 6120025
Alignment:
Q  31 atagattatgtaatattctaaaa--cttttgtttactctcttggttctttcactaaatacaaaatcacttgggattaagttctacttgcaactccggtct 128  Q
    |||||||||||||||||||||||  ||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| || ||||||  ||||| |    
T  6120249 atagattatgtaatattctaaaagacttttgtgtactctcctggttctttcagtaaatacaaaatcacttgggattaagttgtatttgcaatcccggttt 6120150  T
Q  129 accacacctacaaagtctgctgatacacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaaacat-tttctattaccact 227  Q
    || ||| || || ||  |  ||||||||||| |  | ||| ||||||| |||||| |||||||||||||||||||| |||| ||| | ||| |||||       
T  6120149 acgacagctgcagagctttttgatacacttcgcaactaaagaagatggacacatatattttggacaatcagaatctttaaagcatctatct-ttaccgtg 6120051  T
Q  228 cgcttcaatgaaaaaagagaataaaa 253  Q
    | ||||||||||||||||||||||||    
T  6120050 cccttcaatgaaaaaagagaataaaa 6120025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 253
Target Start/End: Original strand, 6073299 - 6073499
Alignment:
Q  53 acttttgtttactctcttggttctttcactaaatacaaaatcacttgggattaagttctacttgcaactccggtctaccacacctacaaagtctgctgat 152  Q
    |||||||| |||||||||||||||| ||| | ||||||||||||||||||||| ||| |  ||  |||| ||||||| ||||  || |||  | | |||     
T  6073299 acttttgtgtactctcttggttcttgcacaacatacaaaatcacttgggattaggtttttatttgaactacggtctaacacatttataaataccgttgac 6073398  T
Q  153 acacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaaacattttctattaccactcgcttcaatgaaaaaagagaataaa 252  Q
    |||||||||| |||||||||| || ||||||  ||||| |||||||  |||||| ||||||||||||  ||||  || ||||||||||||||||||||||    
T  6073399 acacttcacgaccaaataagacggacacatattttttgcacaatcatcatctctgaaacattttctacgaccaaccgtttcaatgaaaaaagagaataaa 6073498  T
Q  253 a 253  Q
    |    
T  6073499 a 6073499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University