View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_77 (Length: 252)
Name: NF16751_low_77
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_77 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 45389511 - 45389747
Alignment:
| Q |
16 |
atatcatttgtaaatattagtttcagagctgacatatgttgcgttttacaatcatgctattctaaatacagagatacacacataatagtctaattaaaag |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45389511 |
atattatttgtaaatattagtttcagagctgacatatgttgcgttttacaatcatgctattctaaatacagagatacacacataatagtctaattaaaag |
45389610 |
T |
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| Q |
116 |
catagagctcaaatggatatttttaacatcattcttgtttaatacttcttactcatctcttcaatatcttatgaaatagagaaaggaatccacatgctat |
215 |
Q |
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| T |
45389611 |
catagagctcaaatggatatttttaacatcattcttgtttaatacttcttactcatcacttcaatatcttatgaaatagagaaaagaatccacatgctat |
45389710 |
T |
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| Q |
216 |
tccctatattgaatttttcaaattgcataagagaaag |
252 |
Q |
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| T |
45389711 |
tccctatattgaatttttcaaattgcataagagaaag |
45389747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 45374353 - 45374589
Alignment:
| Q |
16 |
atatcatttgtaaatattagtttcagagctgacatatgttgcgttttacaatcatgctattctaaatacagagatacacacataatagtctaattaaaag |
115 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||| |||| || |||||||||||||||| ||||| |
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| T |
45374353 |
atatcatttgtaaatattagcttcagagctgacatatgttgtgttttacaatcattctattctaaatatagagctatgcacataatagtctaataaaaag |
45374452 |
T |
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| Q |
116 |
catagagctcaaatggatatttttaacatcattcttgtttaatacttcttactcatctcttcaatatcttatgaaatagagaaaggaatccacatgctat |
215 |
Q |
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||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
45374453 |
catagtgctcaaatggatatttttaacatccttcatgtttaatacttcttactcattatttcaatatcctatgaaatagagaaaggaagccacatgctat |
45374552 |
T |
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| Q |
216 |
tccctatattgaatttttcaaattgcataagagaaag |
252 |
Q |
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| T |
45374553 |
tccctatattgaatttttcaaattgcataagagaaag |
45374589 |
T |
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