View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_78 (Length: 252)
Name: NF16751_low_78
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_78 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 252
Target Start/End: Original strand, 3578162 - 3578406
Alignment:
| Q |
5 |
ggtagataattctagcatgttgagtaacccatgtgtggtatttgaaacgtcttcctagttatattgtgagtctgttgttagataaaactcttaaaaaatt |
104 |
Q |
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| T |
3578162 |
ggtatataaatctagcatgtctagtaatccatgtgtggtatttgaaacgtcttcctagttatattgtgagtc---agatagataaagctcttaaaaaatt |
3578258 |
T |
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| Q |
105 |
tgaaggtatagtatactgtgtgtgatttgatatgagaactgtcaaatacttttgatggtaggtccattatcaaataatcctttcttgaaaacccaattag |
204 |
Q |
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| T |
3578259 |
tgaaggtatagtatactgtgtgtgatttgatatgagaactgtcaaatacttttgatggtaggtctattatcaaataatcctttcttgaaaacccaattag |
3578358 |
T |
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| Q |
205 |
caattattaagagttagttgaaaaacaaaataaattcaactataataa |
252 |
Q |
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| T |
3578359 |
caattattaagagttagttgaaaaacaaaataaattcaactataataa |
3578406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 18152346 - 18152226
Alignment:
| Q |
16 |
ctagcatgttgagtaacccatgtgtggtatttgaaacgtcttcctagttatattgtgagtctgttgttagataaaactcttaaaaaatttgaaggtatag |
115 |
Q |
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| T |
18152346 |
ctagcatgtccagtaacccatgtatggtatttgaaacgtcttcctagttatattgcgagcc---ttttagataaacctcttaaagaattagaaggtctag |
18152250 |
T |
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| Q |
116 |
tatactg---tgtgtgatttgata |
136 |
Q |
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| T |
18152249 |
tatactgcgatgtgtgatttgata |
18152226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 1786404 - 1786446
Alignment:
| Q |
27 |
agtaacccatgtgtggtatttgaaacgtcttcctagttatatt |
69 |
Q |
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| T |
1786404 |
agtaacccatgtgtggcatttgtaacgtcttcctagttatatt |
1786446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 28372041 - 28372161
Alignment:
| Q |
16 |
ctagcatgttgagtaacccatgtgtggtatttgaaacgtcttcctagttatattgtgagtctgttgttagataaaactcttaaaaaatttgaaggtatag |
115 |
Q |
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| T |
28372041 |
ctagcatgtccagtaacccatgtatggtatttgaaacgtcttcctagttatattgcgagcc---ttttagataaacctcttaaagaattagaaggtctag |
28372137 |
T |
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| Q |
116 |
tatactg---tgtgtgatttgata |
136 |
Q |
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| T |
28372138 |
tatactgcgatgtgtgatttgata |
28372161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 28379863 - 28379983
Alignment:
| Q |
16 |
ctagcatgttgagtaacccatgtgtggtatttgaaacgtcttcctagttatattgtgagtctgttgttagataaaactcttaaaaaatttgaaggtatag |
115 |
Q |
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| T |
28379863 |
ctagcatgtccagtaacccatgtatggtatttgaaacgtcttcctagttatattgcgagcc---ttttagataaacctcttaaagaattagaaggtctag |
28379959 |
T |
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| Q |
116 |
tatactg---tgtgtgatttgata |
136 |
Q |
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| T |
28379960 |
tatactgcgatgtgtgatttgata |
28379983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 223391 - 223425
Alignment:
| Q |
34 |
catgtgtggtatttgaaacgtcttcctagttatat |
68 |
Q |
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| T |
223391 |
catgtgtggtatttgaaaggtcttcctagttatat |
223425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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