View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16751_low_8 (Length: 647)

Name: NF16751_low_8
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16751_low_8
NF16751_low_8
[»] chr7 (1 HSPs)
chr7 (20-632)||(10593027-10593630)
[»] chr5 (12 HSPs)
chr5 (335-524)||(14375501-14375686)
chr5 (335-524)||(41449536-41449721)
chr5 (335-524)||(41436323-41436508)
chr5 (335-523)||(14238453-14238637)
chr5 (70-224)||(38271740-38271892)
chr5 (72-224)||(38273423-38273573)
chr5 (98-194)||(38277976-38278078)
chr5 (70-130)||(38270557-38270617)
chr5 (150-236)||(38276852-38276936)
chr5 (582-632)||(14376914-14376964)
chr5 (151-252)||(38278953-38279052)
chr5 (588-632)||(41436186-41436230)
[»] chr8 (4 HSPs)
chr8 (369-524)||(32119103-32119255)
chr8 (197-254)||(32119955-32120012)
chr8 (108-229)||(26577116-26577237)
chr8 (519-603)||(32118988-32119075)


Alignment Details
Target: chr7 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 20 - 632
Target Start/End: Original strand, 10593027 - 10593630
Alignment:
Q  20 atagtgttatattgtattgtgtctgatgtggaacattagtaaatccaacaccaacatgatatagtggtaactttttgtcatgaaattagtctcaaatatc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||| ||||||||||||||||||||||||||||||||||||    
T  10593027 atagtgttatattgtattgtgtctgatgtggaacattagtaaatccaaca------tgatataatggtaactttttgtcatgaaattagtctcaaatatc 10593120  T
Q  120 atcaaaa-tcatttgtattgaataaaatgaaaccaattatatgaatccctacaatgtccgtgtattctagtctaaattaaaaattaaagatacatgacaa 218  Q
    ||||||| ||||||||||| ||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10593121 atcaaaaatcatttgtattcaataaaatgaaattaattatacgaatccctacaatgtccgtgtattctagtctaaattaaaaattaaagatacatgacaa 10593220  T
Q  219 aataaacagaaatagtgaaagagggacatggatacacagaccatttctcaagaaacaagttggctagttaccggtttgtgttttcccaacctatagttcg 318  Q
    ||||||| ||||||    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10593221 aataaactgaaata----aagagggagatggatacacagaccatttctcaagaaacaagttggctagttaccggtttgtgttttcccaacctatagttcg 10593316  T
Q  319 taaagatttcatgttaattagaagctttgatcaactgtcaagatttcatgaaacaaatatgaaactgattaataggtattctcggccaaagttgaacatt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10593317 taaagatttcatgttaattagaagctttgatcaactgtcaagatttcatgaaacaaatatgaaactgattaatgggtattctcggccaaagttgaacatt 10593416  T
Q  419 gctgctgctacggaatggttataaatgtttcagtttagacatgtcgtctttgatcacatttgcctttactttgatattcttgatatcgattccacctgga 518  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10593417 gctgctgctacggaatggttatatatgtttcagtttagacatgtcgtctttgatcacattttcctttactttgatattcttgatatcgattccacctgga 10593516  T
Q  519 atcatatatcgatcaaaacttactcatcctgtgtaatgaaaagttgggcataattgtgtctcagtgtaatttttctgatctttgaaggcattgtgggtct 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  10593517 atcatatatcgatcaaaacttactcatcctgtgtaatgaaaagttgggcataattgtgtctcagtgtaatttttttgatcttttaaggcattgtgggtct 10593616  T
Q  619 agctgttacctatg 632  Q
    ||||||||||||||    
T  10593617 agctgttacctatg 10593630  T

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Target: chr5 (Bit Score: 133; Significance: 8e-69; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 335 - 524
Target Start/End: Original strand, 14375501 - 14375686
Alignment:
Q  335 attagaagctttgatcaactgtcaagatttcatgaaacaaatatgaaactgattaataggtattctcggccaaagttgaacattgctgctgctacggaat 434  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |||||    
T  14375501 attagaagctttgataaacagtcaagatttcatgaaacaaatatgaaactgattgatgggtattctcggccaaagttcaacattgctgctgctatggaat 14375600  T
Q  435 ggttataaatgtttcagtttagacatgtcgtctttgatcacatttgcctttactttgatattcttgatatcgattccacctggaatcata 524  Q
    ||||    ||||||| ||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14375601 ggtt----atgtttccgtttagatatgttgtctttgatcacatttgccttttctttgatattcttgatatcgattccacctggaatcata 14375686  T

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Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 335 - 524
Target Start/End: Complemental strand, 41449721 - 41449536
Alignment:
Q  335 attagaagctttgatcaactgtcaagatttcatgaaacaaatatgaaactgattaataggtattctcggccaaagttgaacattgctgctgctacggaat 434  Q
    ||||||||||||||||||| ||| ||||||||||||||||| |||||||||| | || ||||||||||||||||||| || ||||||||||||| |||||    
T  41449721 attagaagctttgatcaacagtctagatttcatgaaacaaacatgaaactgactgatgggtattctcggccaaagttcaatattgctgctgctatggaat 41449622  T
Q  435 ggttataaatgtttcagtttagacatgtcgtctttgatcacatttgcctttactttgatattcttgatatcgattccacctggaatcata 524  Q
    ||||||    | ||| | ||||| |||| |||||  ||||| ||||||||| | ||||||||||||||||||||||||||||||||||||    
T  41449621 ggttat----gcttccgcttagatatgttgtcttccatcacgtttgccttttccttgatattcttgatatcgattccacctggaatcata 41449536  T

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Target: chr5; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 335 - 524
Target Start/End: Complemental strand, 41436508 - 41436323
Alignment:
Q  335 attagaagctttgatcaactgtcaagatttcatgaaacaaatatgaaactgattaataggtattctcggccaaagttgaacattgctgctgctacggaat 434  Q
    ||||||||||||||||||| ||| |||||| |||||||||| |||||||||| | || ||||||||||||||||||| || |||| |||||||| |||||    
T  41436508 attagaagctttgatcaacagtctagattttatgaaacaaacatgaaactgactgatgggtattctcggccaaagttcaatattgttgctgctatggaat 41436409  T
Q  435 ggttataaatgtttcagtttagacatgtcgtctttgatcacatttgcctttactttgatattcttgatatcgattccacctggaatcata 524  Q
    ||||||    | ||| | ||||| |||| |||||  ||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  41436408 ggttat----gcttccgcttagatatgttgtcttccatcacatttgccttttccttgatattcttgatatcgattccacctggaatcata 41436323  T

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Target: chr5; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 335 - 523
Target Start/End: Complemental strand, 14238637 - 14238453
Alignment:
Q  335 attagaagctttgatcaactgtcaagatttcatgaaacaaatatgaaactgattaataggtattctcggccaaagttgaacattgctgctgctacggaat 434  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| | || |||||||||||||||| || |||||| ||||||||| |||||    
T  14238637 attagaagctttgatcaacagtcaagatttcatgaaacaaatatgaaactgactgatgggtattctcggccaaatttcaacatttctgctgctatggaat 14238538  T
Q  435 ggttataaatgtttcagtttagacatgtcgtctttgatcacatttgcctttactttgatattcttgatatcgattccacctggaatcat 523  Q
    ||||    || |||  | ||||| |||| |||||  |||| |||||||||| | |||  ||||||||||||||||||||||||||||||    
T  14238537 ggtt----atctttacgcttagatatgttgtcttccatcatatttgccttttccttggcattcttgatatcgattccacctggaatcat 14238453  T

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Target: chr5; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 70 - 224
Target Start/End: Complemental strand, 38271892 - 38271740
Alignment:
Q  70 ccaacatgatatagtggtaactttttgtcatgaaattagtctcaaatatcatcaaaatcatttgtattgaataaaatgaaaccaattatatgaatcccta 169  Q
    ||||||||||||||  || ||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||| ||    
T  38271892 ccaacatgatataggagtcactttctgtcatgaaatttgtctcaaacatcatcaaaatcatttgtattgaataaaataaaaccaattacatgaatcctta 38271793  T
Q  170 caatgtccgtgtattctagtctaaattaaaaattaaagatacatgacaaaataaa 224  Q
     |||| | ||| | |||||||||||  || |||||||||||||||||||||||||    
T  38271792 taatgccggtgaactctagtctaaa--aagaattaaagatacatgacaaaataaa 38271740  T

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Target: chr5; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 38273573 - 38273423
Alignment:
Q  72 aacatgatatagtggtaactttttgtcatgaaattagtctcaaatatcatcaaaatcatttgtattgaataaaatgaaaccaattatatgaatccctaca 171  Q
    ||||||||||||| || || || |||||||||||| | |||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| ||| |    
T  38273573 aacatgatatagtagtcacgttctgtcatgaaatttgcctcaaacatcaccaaaatcatttgtattgaataaaatgaaaccaattatacgaatctctata 38273474  T
Q  172 atgtccgtgtattctagtctaaattaaaaattaaagatacatgacaaaataaa 224  Q
    ||||| ||| ||||||| |||||  || |||||||||||||||||||||||||    
T  38273473 atgtctgtgcattctaggctaaa--aataattaaagatacatgacaaaataaa 38273423  T

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Target: chr5; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 98 - 194
Target Start/End: Complemental strand, 38278078 - 38277976
Alignment:
Q  98 catgaaattagtctcaaatatcatcaaaatcatttgtat--tgaataaaatgaaaccaattatat----gaatccctacaatgtccgtgtattctagtct 191  Q
    ||||||||| ||||||||  |||||||||||||||||||  ||||||||||||||| ||||||||    ||||||||| |||||||||||||||||||||    
T  38278078 catgaaatttgtctcaaacgtcatcaaaatcatttgtatattgaataaaatgaaacaaattatatatatgaatccctataatgtccgtgtattctagtct 38277979  T
Q  192 aaa 194  Q
    |||    
T  38277978 aaa 38277976  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 38270617 - 38270557
Alignment:
Q  70 ccaacatgatatagtggtaactttttgtcatgaaattagtctcaaatatcatcaaaatcat 130  Q
    ||||||||||||||| || ||||| |||||||||||| |||||||| ||||||||||||||    
T  38270617 ccaacatgatatagtagtcactttctgtcatgaaatttgtctcaaacatcatcaaaatcat 38270557  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 38276936 - 38276852
Alignment:
Q  150 accaattatatgaatccctacaatgtccgtgtattctagtctaaattaaaaattaaagatacatgacaaaataaacagaaatagtga 236  Q
    |||||| |||||||||| || ||||||| ||||||| | ||||||  || ||||||| ||||||||||||||||| |||||||||||    
T  38276936 accaatcatatgaatccatataatgtccatgtattcaaatctaaa--aataattaaatatacatgacaaaataaaaagaaatagtga 38276852  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 582 - 632
Target Start/End: Original strand, 14376914 - 14376964
Alignment:
Q  582 gtgtaatttttctgatctttgaaggcattgtgggtctagctgttacctatg 632  Q
    |||| ||||||||||| |||||||||||||  |||||||||||||||||||    
T  14376914 gtgtcatttttctgatttttgaaggcattgctggtctagctgttacctatg 14376964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 252
Target Start/End: Complemental strand, 38279052 - 38278953
Alignment:
Q  151 ccaattatatgaatccctacaatgtccgtgtattctagtctaaattaaaaattaaagatacatgacaaaataaacagaaatagtgaaagagggacatgga 250  Q
    |||||||||||||||||||  | ||  |||||||||| ||||||  || ||| |||||||||||| |||||||| ||||||||| || ||| ||||| ||    
T  38279052 ccaattatatgaatccctatgacgttggtgtattctattctaaa--aataataaaagatacatgataaaataaaaagaaatagtaaaggagagacattga 38278955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 588 - 632
Target Start/End: Complemental strand, 41436230 - 41436186
Alignment:
Q  588 tttttctgatctttgaaggcattgtgggtctagctgttacctatg 632  Q
    |||| ||||| |||||||||||||  |||||||||||||||||||    
T  41436230 ttttcctgatttttgaaggcattgctggtctagctgttacctatg 41436186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 369 - 524
Target Start/End: Complemental strand, 32119255 - 32119103
Alignment:
Q  369 aaacaaatatgaaactgattaataggtattctcggccaaagttgaacattgctgctgctacggaatggttataaatgtttcagtttagacatgtcgtctt 468  Q
    ||||| ||||||| ||||||||| | ||||||  ||||||||| |||||||||||||||| |||||||||||    || || || |||| |||| |||||    
T  32119255 aaacatatatgaacctgattaatggatattctttgccaaagttcaacattgctgctgctatggaatggttat----gtctccgtatagatatgttgtctt 32119160  T
Q  469 tgatcacatttgcctttactttgatattcttgatatc-gattccacctggaatcata 524  Q
    |||||| ||||| |||| ||||||||||||||||||| || ||||||||||||||||    
T  32119159 tgatcagatttgtcttttctttgatattcttgatatcagaatccacctggaatcata 32119103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 32120012 - 32119955
Alignment:
Q  197 aaaaattaaagatacatgacaaaataaacagaaatagtgaaagagggacatggataca 254  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  32120012 aaaaattaaagatacatgacaaaataaaaagaaatagtgaaagagagacatggataca 32119955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 26577237 - 26577116
Alignment:
Q  108 gtctcaaatatcatcaaaatcatttgtattgaataaaatgaaaccaatt--atatgaatccctacaatgtccgtgtattctagtctaaattaaaaattaa 205  Q
    ||||||| |||||||||||||| ||||||||||| ||||||| ||||||  ||| |||||| ||  ||||  ||||||| |||||||||  || ||||||    
T  26577237 gtctcaactatcatcaaaatcaattgtattgaatcaaatgaagccaattaaataagaatccatatgatgtatgtgtattttagtctaaa--aataattaa 26577140  T
Q  206 agatacatgacaaaataaacagaa 229  Q
    |||| |||||||||||||| ||||    
T  26577139 agatgcatgacaaaataaaaagaa 26577116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 603
Target Start/End: Complemental strand, 32119075 - 32118988
Alignment:
Q  519 atcatatatcgatcaaaacttactcatcctgtgtaatgaaaagttgggcataattgtgtctc---agtgtaatttttctgatctttga 603  Q
    |||||||||| ||||||| ||||||  | |||||| ||| ||||| ||||||||||| ||||   ||||| ||||||||||| |||||    
T  32119075 atcatatatcaatcaaaatttactctgcttgtgtattgagaagttaggcataattgtctctccttagtgtcatttttctgatttttga 32118988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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