View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16751_low_81 (Length: 246)
Name: NF16751_low_81
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_81 |
 | |
|
| [»] scaffold0245 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 27196649 - 27196871
Alignment:
| Q |
11 |
caaaggcctcgtatccttttagttcaatgttcaactcttggctccaataaatctgnnnnnnnnnnc-cttcataaaacatatgtaatttttatttattgt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27196649 |
caaaggcctcgtatccttttagttcaatgttcaaatcttggctccaataaatctgtttttttttttgcttcataaaacatatgtaatttttatttattgt |
27196748 |
T |
|
| Q |
110 |
aaaagatctcacaataaaaattgttttaggcgtctacacttgttgtgccggccttagactacaaaaaacaaatatttatatgtttcattcgaattacatt |
209 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
27196749 |
aaaagatttcacaataaaaattgttttaggcgtctacacttgttgtgccggccttagactacaaaaaacaaatatttagatgtttcatttgaattacatt |
27196848 |
T |
|
| Q |
210 |
cttccacacaaaaatgatgatat |
232 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
27196849 |
cttccacacaaaaatgatgatat |
27196871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 34779615 - 34779660
Alignment:
| Q |
93 |
taatttttatttattgtaaaagatctcacaataaaaattgttttag |
138 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34779615 |
taatttttatttattttaaaagatctcacaataaaaattgttttag |
34779660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 1292269 - 1292199
Alignment:
| Q |
92 |
gtaatttttatttattgtaaaagatctcacaataaaaattgttttaggcgtctacacttgttgtgccggcc |
162 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| |||| ||| ||||||| |||| || ||||| ||||||| |
|
|
| T |
1292269 |
gtaatttttatttattttaaaaggcctcacaagaaaagttgctttaggcctctaaacatgttgggccggcc |
1292199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 37943177 - 37943241
Alignment:
| Q |
90 |
atgtaatttttatttattgtaaaagatctcacaataaaaattgttttaggcgtctacacttgttg |
154 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||| || || |||||||| |||| || ||||| |
|
|
| T |
37943177 |
atgtaatttttatttattttaaaaggtctcacaatagaagttattttaggcctctaaacatgttg |
37943241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 18674 - 18604
Alignment:
| Q |
92 |
gtaatttttatttattgtaaaagatctcacaataaaaattgttttaggcgtctacacttgttgtgccggcc |
162 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| |||| ||| ||||||| |||| || ||||| ||||||| |
|
|
| T |
18674 |
gtaatttttatttattttaaaaggcctcacaagaaaagttgctttaggcctctaaacatgttgggccggcc |
18604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 36945279 - 36945324
Alignment:
| Q |
95 |
atttttatttattgtaaaagatctcacaataaaaattgttttaggc |
140 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||| ||||| ||||| |
|
|
| T |
36945279 |
atttttatttattttaaaagatctcataataaaagttgttgtaggc |
36945324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 8369713 - 8369664
Alignment:
| Q |
89 |
tatgtaatttttatttattgtaaaagatctcacaataaaaattgttttag |
138 |
Q |
| |
|
||||||||||||||||||| ||||||||| || |||| ||| |||||||| |
|
|
| T |
8369713 |
tatgtaatttttatttattttaaaagatcacataatagaaagtgttttag |
8369664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University