View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_87 (Length: 238)
Name: NF16751_low_87
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_87 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 8101456 - 8101664
Alignment:
| Q |
19 |
atcctaaatttagaaattatttattcaaaaaatcaaatgttacaaattccaacgaaagaaatacacatattttcataaatatatacttttaaaaatcctt |
118 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8101456 |
atcctaaatttagaaattattcattcaaaaaatcaaatgttacaaatttcaacaaaagaaatacacatattttcataaatatatacttttaaaaatcttt |
8101555 |
T |
|
| Q |
119 |
aaagagtatcagaaaggcagtcgttagtatttttcttcaaac-aaaagctcataactgagtcttcacaaaatccaaaatgcaactaattatgtgattgga |
217 |
Q |
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||||||| ||||||||||||| |||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8101556 |
aaagagtgtcagaaaggcagttgttaatattttccttcaaacaaaaagctcataactgagtcttcacaaaatccaaaatgcaactaattatgtgattgga |
8101655 |
T |
|
| Q |
218 |
tcctatgct |
226 |
Q |
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||||||||| |
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| T |
8101656 |
tcctatgct |
8101664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 815003 - 815054
Alignment:
| Q |
19 |
atcctaaatttagaaattatttattcaaaaaatcaaatgttacaaattccaa |
70 |
Q |
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|||| ||||||||||||||||| || |||||||||||||| ||||||||||| |
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| T |
815003 |
atcccaaatttagaaattattttttaaaaaaatcaaatgtcacaaattccaa |
815054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 41583550 - 41583654
Alignment:
| Q |
19 |
atcctaaatttagaaattatttattcaaaaaatcaaatgttacaaattccaacgaaagaaatacacatattttcataaatatatacttttaaaaatcctt |
118 |
Q |
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|||| |||||||||||||||| |||||||| | |||| ||||||||||||| | | |||||||| ||||||||||| || |||| || || || ||| |
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| T |
41583550 |
atcccaaatttagaaattattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattctt |
41583649 |
T |
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| Q |
119 |
aaaga |
123 |
Q |
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||||| |
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| T |
41583650 |
aaaga |
41583654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 7574273 - 7574231
Alignment:
| Q |
24 |
aaatttagaaattatttattcaaaaaatcaaatgttacaaatt |
66 |
Q |
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||||||||||| ||||| || |||||||||||||||||||||| |
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| T |
7574273 |
aaatttagaaaatatttcttaaaaaaatcaaatgttacaaatt |
7574231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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