View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_91 (Length: 236)
Name: NF16751_low_91
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_91 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39027153 - 39026932
Alignment:
| Q |
1 |
atcattcacctaattcagctacaactttcatcacttcctctaatcatcaccctttacacaatcgatcccaatattttattttgcaggtaccttttgaatt |
100 |
Q |
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| T |
39027153 |
atcattcacctaattcagctacaactttcatcacttcctctaatcatcaccctttacacaatcgatcccaatattttattttgaaggtaccttttgaatt |
39027054 |
T |
|
| Q |
101 |
caaaatccttgaaagagnnnnnnngtatctggtgcatgacatgttttatgttttcaggatattctgaggagtgatacaacatcaacagaagctaaagtta |
200 |
Q |
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| T |
39027053 |
caaaatccttgaaagagtttttttgtatctggtgcatgacatgttttatgttttcaggatattctgaggagtgatacaacatcaacagaagctaaagtta |
39026954 |
T |
|
| Q |
201 |
tgaagtatgtgttgaagcatct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
39026953 |
tgaagtatgtgttgaagcatct |
39026932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 18330095 - 18330158
Alignment:
| Q |
19 |
ctacaactttcatcacttcctctaatcatcaccctttacacaatcgatcccaatattttatttt |
82 |
Q |
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|||||| |||| |||||||||||||||| ||| ||||||||||| || || ||||||||||||| |
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| T |
18330095 |
ctacaagtttcttcacttcctctaatcaccacactttacacaattgaaccgaatattttatttt |
18330158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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