View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_94 (Length: 231)
Name: NF16751_low_94
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_94 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 1032443 - 1032594
Alignment:
| Q |
16 |
cattaatttgatttaattggtatcaaaatggaagctgatcccattcctcttcttacaccttacaagatgggcaatttcaatctctctcacaggtacctgt |
115 |
Q |
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| T |
1032443 |
cattaatttgatttaattggtatcaaaatggaagctgatcccattcctcttcttacaccttacaagatgggcaatttcagtctctctcataggtacctat |
1032542 |
T |
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| Q |
116 |
tatactttcaatttcaatgttatgtttatttcactttctattcaatttcaat |
167 |
Q |
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| T |
1032543 |
tatactttcaatttcaatgttatgtttatttcactttctattcaatttcaat |
1032594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 1051766 - 1051917
Alignment:
| Q |
16 |
cattaatttgatttaattggtatcaaaatggaagctgatcccattcctcttcttacaccttacaagatgggcaatttcaatctctctcacaggtacctgt |
115 |
Q |
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| T |
1051766 |
cattaatttgatttaattggtatcaaaatggaagctgatcccattcctcttcttacaccttacaagatgggcaatttcagtctctctcataggtacctat |
1051865 |
T |
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| Q |
116 |
tatactttcaatttcaatgttatgtttatttcactttctattcaatttcaat |
167 |
Q |
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| T |
1051866 |
tatactttcaatttcaatgttatgtttatttcactttctattcaatttcaat |
1051917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 1045497 - 1045556
Alignment:
| Q |
51 |
tgatcccattcctcttcttacaccttacaagatgggcaatttcaatctctctcacaggta |
110 |
Q |
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| T |
1045497 |
tgatcccattcctcttcttactccttacaagatgggcaaattcaatctatctcataggta |
1045556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 1049013 - 1049074
Alignment:
| Q |
50 |
ctgatcccattcctcttcttacaccttacaagatgggcaatttcaatctctctcacaggtac |
111 |
Q |
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| T |
1049013 |
ctgatccaattcctcttcttacacattacaagatgggcaaattcaatctagctcataggtac |
1049074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 1644459 - 1644400
Alignment:
| Q |
51 |
tgatcccattcctcttcttacaccttacaagatgggcaatttcaatctctctcacaggta |
110 |
Q |
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| T |
1644459 |
tgatcccattcctcttcttactccttacaagatgggaaaatttaatctatctcataggta |
1644400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 1042912 - 1042965
Alignment:
| Q |
58 |
attcctcttcttacaccttacaagatgggcaatttcaatctctctcacaggtac |
111 |
Q |
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| T |
1042912 |
attcctcttcttacaccttacaagatgggtaaattcaatctagctcataggtac |
1042965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 1069955 - 1070007
Alignment:
| Q |
58 |
attcctcttcttacaccttacaagatgggcaatttcaatctctctcacaggta |
110 |
Q |
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| T |
1069955 |
attcctcttcttactccttacaaaatgggtaaattcaatctatctcataggta |
1070007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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