View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16751_low_99 (Length: 203)
Name: NF16751_low_99
Description: NF16751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16751_low_99 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 9e-69; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 5502654 - 5502825
Alignment:
| Q |
18 |
caacaaaggtcatcaaatgaagtatgtcaaaatccaaatggccttcacttatgtggatatgtcaagcaactatttggaggggccaatacctgatgagctg |
117 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| |||||||||||||||||||| |
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| T |
5502654 |
caacaaaggtcaacaaatgaagtatgtcaaaatccaaatggccttcacttatgtggatatgtcaaacaattacttggaagggccaatacctgatgagcta |
5502753 |
T |
|
| Q |
118 |
atggaattcaaggcactaaatgctctgaacttatcacataacacatttacaggtcatataccatcatctgtg |
189 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||| ||||||| |||| |||||||||||||||| |
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| T |
5502754 |
atggaattcaaggcactgaatgctctgaacttatcacataacgcatttacgggtcctataccatcatctgtg |
5502825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 5346275 - 5346136
Alignment:
| Q |
19 |
aacaaaggtcatcaaatgaagtatgtcaaaatccaaatggccttcacttatgtggatatgtcaagcaactatttggaggggccaatacctgatgagctga |
118 |
Q |
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|||||||||||||| |||||| ||||||| |||||| |||||||||||||||||||||||||| ||| || |||||||| ||||||||| ||||||| | |
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| T |
5346275 |
aacaaaggtcatcagatgaagcttgtcaaagtccaaaaggccttcacttatgtggatatgtcaaacaattacttggagggaccaatacctaatgagctaa |
5346176 |
T |
|
| Q |
119 |
tggaattcaaggcactaaatgctctgaacttatcacataa |
158 |
Q |
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| T |
5346175 |
tgcaattcaaggcattgaatgctctgaacttgtcacataa |
5346136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 5356902 - 5357073
Alignment:
| Q |
18 |
caacaaaggtcatcaaatgaagtatgtcaaaatccaaatggccttcacttatgtggatatgtcaagcaactatttggaggggccaatacctgatgagctg |
117 |
Q |
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|||||||||| |||||||||| ||||||||| ||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
5356902 |
caacaaaggtagacaaatgaagtttgtcaaaattgaaatggcattcacttatgtggatatatcaaacaactatttggaggggccaatacctgatgagcta |
5357001 |
T |
|
| Q |
118 |
atggaattcaaggcactaaatgctctgaacttatcacataacacatttacaggtcatataccatcatctgtg |
189 |
Q |
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|||||||| | | | | ||||||||||||||||||||||| | |||| ||||||||| | ||||||||| |
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| T |
5357002 |
atggaattggaagtattgaatgctctgaacttatcacataatgcttttatgggtcatatatcgtcatctgtg |
5357073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 5467896 - 5467729
Alignment:
| Q |
18 |
caacaaaggtcatcaaatgaagtatgtcaaaatccaaatggccttcacttatgtggatatgtcaagcaactatttggaggggccaatacctgatgagctg |
117 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| |||| |||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| | |
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| T |
5467896 |
caacaaaggtcatcagatgaagcttgtcaaaattcaaagtgccttcacttatgttgatatgtcaagcaactatttagaggggccaataccgaatgagtta |
5467797 |
T |
|
| Q |
118 |
atggaattcaaggcactaaatgctctgaacttatcacataacacatttacaggtcatataccatcatc |
185 |
Q |
| |
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||| ||||||||||| | |||||||| || || || ||||| |||| ||||| |||||||||||||| |
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| T |
5467796 |
atgcaattcaaggcattgaatgctctaaatttgtcgcataatgcattaacaggccatataccatcatc |
5467729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 5379134 - 5379300
Alignment:
| Q |
19 |
aacaaaggtcatcaaatgaagtatgtcaaaatccaaatggccttcacttatgtggatatgtcaagcaactatttggaggggccaatacctgatgagctga |
118 |
Q |
| |
|
|||||||||||||| |||||| | ||||| | |||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| | | |
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| T |
5379134 |
aacaaaggtcatcagatgaagcttatcaaagttcaaaaggccttcacttatgttgatatgtcaagcaactatttagaggggccaataccgaatgagttaa |
5379233 |
T |
|
| Q |
119 |
tggaattcaaggcactaaatgctctgaacttatcacataacacatttacaggtcatataccatcatc |
185 |
Q |
| |
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|| ||||||||||| | |||||||| || || || ||||| |||| ||||| |||||||||||||| |
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| T |
5379234 |
tgcaattcaaggcattgaatgctctaaatttgtcgcataatgcattaacaggccatataccatcatc |
5379300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 5412888 - 5413055
Alignment:
| Q |
18 |
caacaaaggtcatcaaatgaagtatgtcaaaatccaaatggccttcacttatgtggatatgtcaagcaactatttggaggggccaatacctgatgagctg |
117 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| |||| |||||||||| || |||||||||||||||||||||| ||||||||||||||||| | || |
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| T |
5412888 |
caacaaaggtcagcaaatgaatgttgtcaaaattcaaagtaccttcacttacgttgatatgtcaagcaactatttgggggggccaatacctgatgtgttg |
5412987 |
T |
|
| Q |
118 |
atggaattcaaggcactaaatgctctgaacttatcacataacacatttacaggtcatataccatcatc |
185 |
Q |
| |
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||| |||||| ||| | |||||||| ||||| |||||||| |||| || || |||||||||||||| |
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| T |
5412988 |
atgcgattcaaagcattgaatgctctaaacttgtcacataatgcattaacgggacatataccatcatc |
5413055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 5423593 - 5423426
Alignment:
| Q |
18 |
caacaaaggtcatcaaatgaagtatgtcaaaatccaaatggccttcacttatgtggatatgtcaagcaactatttggaggggccaatacctgatgagctg |
117 |
Q |
| |
|
||||||||||||||| |||||| ||||||| | |||| ||| |||||||||||||||||||||||||| || || ||||| | ||||||||||||| | |
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| T |
5423593 |
caacaaaggtcatcagatgaagcttgtcaaagttcaaacggctttcacttatgtggatatgtcaagcaattacttagagggacaaatacctgatgagtta |
5423494 |
T |
|
| Q |
118 |
atggaattcaaggcactaaatgctctgaacttatcacataacacatttacaggtcatataccatcatc |
185 |
Q |
| |
|
||| ||||||||||| | | ||||| ||||| |||||||| |||| || || |||||||||||||| |
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| T |
5423493 |
atgcaattcaaggcattgatggctctaaacttgtcacataatgcattaacgggacatataccatcatc |
5423426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 5393439 - 5393605
Alignment:
| Q |
18 |
caacaaaggtcatcaaatgaagtatgtcaaaatccaaatggccttcacttatgtggatatgtcaagcaactatttggaggggccaatacctgatgagctg |
117 |
Q |
| |
|
||||||||| ||||| |||||| ||||||||| |||| ||||| |||||||| |||||||||||||| || || |||||||||||||| ||||| | |
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| T |
5393439 |
caacaaaggccatcagatgaagcttgtcaaaattcaaagtgccttaacttatgttgatatgtcaagcaattacttagaggggccaataccgaatgagtta |
5393538 |
T |
|
| Q |
118 |
atggaattcaaggcactaaatgctctgaacttatcacataacacatttacaggtcatataccatcat |
184 |
Q |
| |
|
||| ||||||||||| | |||||||| ||||| |||||||| |||| | |||||||||||||||| |
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|
| T |
5393539 |
atgcaattcaaggcattgaatgctctaaacttgtcacataatgcattaatgggtcatataccatcat |
5393605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 5354828 - 5354928
Alignment:
| Q |
58 |
gccttcacttatgtggatatgtcaagcaactatttggaggggccaatacctgatgagctgatggaattcaaggcactaaatgctctgaacttatcacata |
157 |
Q |
| |
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|||||||||||| | |||||||||| ||||||||||||||||||||||||| ||||| | | | |||| || ||| | |||||||| ||||| ||||||| |
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| T |
5354828 |
gccttcacttatatagatatgtcaaacaactatttggaggggccaataccttatgagataacgcaattgaaagcattgaatgctctaaacttgtcacata |
5354927 |
T |
|
| Q |
158 |
a |
158 |
Q |
| |
|
| |
|
|
| T |
5354928 |
a |
5354928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 20329309 - 20329476
Alignment:
| Q |
18 |
caacaaaggtcatcaaatgaagtatgtcaaaatccaaatggccttcacttatgtggatatgtcaagcaactatttggaggggccaatacctgatgagctg |
117 |
Q |
| |
|
||||||||||||||| |||||| ||||||| | |||| ||| |||||||||||||||||||||||||| || || ||||| | ||||||||||||| | |
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|
| T |
20329309 |
caacaaaggtcatcagatgaagcttgtcaaagttcaaacggctttcacttatgtggatatgtcaagcaattacttagagggacaaatacctgatgagtta |
20329408 |
T |
|
| Q |
118 |
atggaattcaaggcactaaatgctctgaacttatcacataacacatttacaggtcatataccatcatc |
185 |
Q |
| |
|
||| ||||||||||| | | ||||| ||||| |||||||| |||| || || |||||||||||||| |
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|
| T |
20329409 |
atgcaattcaaggcattgatggctctaaacttgtcacataatgcattaacgggacatataccatcatc |
20329476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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