View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16752_high_2 (Length: 302)
Name: NF16752_high_2
Description: NF16752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16752_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 44185966 - 44186249
Alignment:
| Q |
1 |
tgttcacaatttacctaaggtctaaatccctatgccacaatattaaaacagtattagggaaaataactcattaatctatgtgcatatagattggacatat |
100 |
Q |
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| T |
44185966 |
tgttcacaagttacctaaggtctaaatccctatgccacaatattaaaacagtattagggaaaatgactcattaatctatgtgcatatagattggacatat |
44186065 |
T |
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| Q |
101 |
atttgcatattggaaaacaaaatggttttacaatcttgtgatgtggactgaatatctcatcacatctaaacaagttgcagctacacaacatacttcgcaa |
200 |
Q |
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| T |
44186066 |
atttgcatattggaaaacaaaatggttttacaatcttgtgatgtggactgaatatctcatcacatctaaacaagttgcagctacacaacatacttcgcaa |
44186165 |
T |
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| Q |
201 |
gtctatgtatattttagtacctatttccaatgaatgatagataacaagctaacaacatatacctatactccatgcaactaaatatc |
286 |
Q |
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| T |
44186166 |
gtctatgtatattttagtacctatttccaatgaatgatagataacaagctaacaacatatacc--tactccatgcaactaaatatc |
44186249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 44191957 - 44192003
Alignment:
| Q |
1 |
tgttcacaatttacctaaggtctaaatccctatgccacaatattaaa |
47 |
Q |
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| T |
44191957 |
tgttcacaagttacctaaagtctaaatccctatgccacaatattaaa |
44192003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 40397620 - 40397673
Alignment:
| Q |
205 |
atgtatattttagtacctatttccaatgaatgatagataacaagctaacaacat |
258 |
Q |
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| T |
40397620 |
atgtacattttagtacctattttcaatcaatgagaaataacaagcaaacaacat |
40397673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 19162652 - 19162706
Alignment:
| Q |
205 |
atgtatattttagtacctatttccaatgaatgatagataacaagctaacaacata |
259 |
Q |
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| T |
19162652 |
atgtatattttagtacctacgtccaatcaatgatagataacaagctaacaacata |
19162706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 30742357 - 30742318
Alignment:
| Q |
141 |
atgtggactgaatatctcatcacatctaaacaagttgcag |
180 |
Q |
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| T |
30742357 |
atgtggactgaatatctcatcacttttaaacaagttgcag |
30742318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 194
Target Start/End: Complemental strand, 27186054 - 27186025
Alignment:
| Q |
165 |
tctaaacaagttgcagctacacaacatact |
194 |
Q |
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| T |
27186054 |
tctaaacaagttgcagctacacaacatact |
27186025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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