View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16752_low_2 (Length: 347)
Name: NF16752_low_2
Description: NF16752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16752_low_2 |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 47 - 334
Target Start/End: Original strand, 34217066 - 34217353
Alignment:
| Q |
47 |
agccatagagaaagatgacattgattgcaggcattccttcaagctatctatagggttcacttgaaaggtccaactttctaccgataaggccttagcggag |
146 |
Q |
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| T |
34217066 |
agccatagagaaagaattcattgattgcaggcattccttcaagctatctatgggattcacttgaacggtccaactttctaccgataaggccttagcggag |
34217165 |
T |
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| Q |
147 |
aaatatagaaataccaaatatttctaccttatattgcatgagttaaaacaagaaataaaataaagccttaagggtaaagttttgttctcaagataagaga |
246 |
Q |
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| T |
34217166 |
aaatatagaaataccaaatatttctaccttatattgcatgagttaaaacaagaaataaaataaagccttaagggtaaagttttgttctcaagataagaga |
34217265 |
T |
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| Q |
247 |
gatatgataatgcaaattaagatatcttatccaaatcgaatatttattaattagtcagcaaaatatgatattatcaccctatcctatg |
334 |
Q |
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| T |
34217266 |
gatatgataatgcaaattaagatatcttatccaaatcgaatatttattaattagtcagcaaaatatgatattatcaccctatcctatg |
34217353 |
T |
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Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 34166973 - 34167062
Alignment:
| Q |
47 |
agccatagagaaagatgacattgattgcaggcattccttcaagctatctatagggttcacttgaaaggtccaactttctaccgataaggc |
136 |
Q |
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| T |
34166973 |
agccatagagaaagatgacattgattgcaggcattccttcaagctatctatggggttcacttgaacggtccaattttctaccgataaggc |
34167062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 33794 - 33883
Alignment:
| Q |
47 |
agccatagagaaagatgacattgattgcaggcattccttcaagctatctatagggttcacttgaaaggtccaactttctaccgataaggc |
136 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |
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| T |
33794 |
agccatagagaaagatgacattgattgcaggcattccttcaagctatctatggggttcacttgaacggtccaattttctaccgataaggc |
33883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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