View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16753_high_6 (Length: 368)
Name: NF16753_high_6
Description: NF16753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16753_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 21153156 - 21153254
Alignment:
| Q |
16 |
aatattaggaggggcaacaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataataaa |
114 |
Q |
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| T |
21153156 |
aatattaggaggagcaacaaatactaacaaattttttaatacaaataatactacagacaggtacgttaaacacaaagtatgcgaagagtagataataaa |
21153254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 21160291 - 21160389
Alignment:
| Q |
16 |
aatattaggaggggcaacaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataataaa |
114 |
Q |
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| T |
21160291 |
aatattaggaggagcaacaaatactaacaaattttttaatacaaataatactacagacaggtacgttaaacacaaagtatgcgaagagtagataataaa |
21160389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 21164097 - 21164195
Alignment:
| Q |
16 |
aatattaggaggggcaacaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataataaa |
114 |
Q |
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| T |
21164097 |
aatattaggaggagcaacaaatactaacaaattttttaatacaaataatactatagacaggtacgttaagcacaaagtatgcgaagagtagataataaa |
21164195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 2717829 - 2717933
Alignment:
| Q |
32 |
acaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataataaaggataacaaaaagacga |
131 |
Q |
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| T |
2717829 |
acaaatactaacta-ttttttaatgcaaataatatcactgacaactatattaagcacaaagtgtgccaagagtagataaaaaaggataacaaagaggcga |
2717927 |
T |
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| Q |
132 |
tacaat |
137 |
Q |
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||||| |
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| T |
2717928 |
aacaat |
2717933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 2718025 - 2718070
Alignment:
| Q |
230 |
aaaagaactttacaatctacttctttggctactctacatgcatatc |
275 |
Q |
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| T |
2718025 |
aaaaaaactttacaatgtacttctttggctactctacatgcatatc |
2718070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 22343565 - 22343631
Alignment:
| Q |
129 |
cgatacaatgccaaaacgtcacaaaactacagccaccaaaagaacaaacacaacactaccaaaacct |
195 |
Q |
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| T |
22343565 |
cgatacaatgctaaaatggcacaaaacaccaaccaccaaaacaacaaacacaaaactaccaaaacct |
22343631 |
T |
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