View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16753_low_1 (Length: 699)
Name: NF16753_low_1
Description: NF16753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16753_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 559; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 13 - 683
Target Start/End: Original strand, 37989542 - 37990212
Alignment:
| Q |
13 |
cagatgacaaaagaaccctactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaaccatcgactgctgtaacagtacatg |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37989542 |
cagatgacaaaagaaccctactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaaccatcgactgctgtaacagtacatg |
37989641 |
T |
|
| Q |
113 |
gctaggtgttgattgtgacaactacaaccgaacctaccgtatcactagtcttgatctccgcaacatcagcctccccaaacctgtcccaattccaacctcc |
212 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| |||||| |||||||||||||||||| | ||| |
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| T |
37989642 |
gctaggtgtagattgtgacaacttcaaccgaacctaccgtatcaccggtcttgatctcgaaaacatcaacctccctaaacctgtcccaattccaccttcc |
37989741 |
T |
|
| Q |
213 |
atattcaacctccctttcgtaaacttcctctatctcgcctacatgcccaaccttgttggccctatccctccttccatctccaaactctccaaactcaatt |
312 |
Q |
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|||||||| ||||||| | ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37989742 |
atattcaatctcccttccctaaacgtcctctatctggcctacatgcccaaccttgttggccctatccctccttccatctccaaactctccaaactcaatt |
37989841 |
T |
|
| Q |
313 |
atatctacatcatccaaaccaacatctccggggagatacctaacactctctcacagatcaaaacactagtaaccatctccttcaatagcaacaaactcac |
412 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37989842 |
atatctacatcatccaaaccaacatctccggggagataccttacactctctcacagatcaaaacactagtaaccatctccttcaatagcaacaaactcac |
37989941 |
T |
|
| Q |
413 |
cggtcccctccccgcttcactctcaactatcccaaccctcgctggaatcgcattcaacgataaccaactctccggcacaataccagaatcttacggctca |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37989942 |
cggtcccctccccgcttcactctcaactatcccaaccctcgctggaatcgcattcaacgataaccaactcaccggcacaataccagaatcttacggctca |
37990041 |
T |
|
| Q |
513 |
tttccgcctctctttaccgggttgcttctctcgcgaaaccgtctctccgggaaggttcctgcgtcactggggaaactaaaccttgctgatgtggacttgt |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| || || || ||||||| |||||||||||||||||||||| |
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| T |
37990042 |
tttccgcctctctttaccgggttgcttctctcgcgaaaccgactctccgggaagattccggcttccctccggaaactgaaccttgctgatgtggacttgt |
37990141 |
T |
|
| Q |
613 |
cacataacgcgtttgagggtgatgcgtccatgttttttaagtcggatatactcacttatacgataacattg |
683 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37990142 |
cacataacgcgtttgagggtgatgcgtccatgttttttaagtcaaatatactcacttatacgataacattg |
37990212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 192 - 461
Target Start/End: Original strand, 37993905 - 37994174
Alignment:
| Q |
192 |
cctgtcccaattccaacctccatattcaacctccctttcgtaaacttcctctatctcgcctacatgcccaaccttgttggccctatccctccttccatct |
291 |
Q |
| |
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||||| ||||||||| ||||||||||||||||||||||| | | |||| |||| ||| |||||||| || || |||||||||| ||||| | |
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| T |
37993905 |
cctgttccaattccaccctccatattcaacctccctttcctcttatacctcactctcatgaacacacccaacctcgtcggaactatccctccctccatat |
37994004 |
T |
|
| Q |
292 |
ccaaactctccaaactcaattatatctacatcatccaaaccaacatctccggggagatacctaacactctctcacagatcaaaacactagtaaccatctc |
391 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
37994005 |
ccaacctcaccaaactcaattccatctacatcatccaaaccaacatctccggcgagatacctaacactctctcagagatcaaaaccctagtaaccatcga |
37994104 |
T |
|
| Q |
392 |
cttcaatagcaacaaactcaccggtcccctccccgcttcactctcaactatcccaaccctcgctggaatc |
461 |
Q |
| |
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| ||| |||||||||||| |||||||||||||| |||||||||||| | || | ||||||||||||| |
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| T |
37994105 |
catcagcgacaacaaactcactggtcccctccccgcatcactctcaactctacctaacctcgctggaatc |
37994174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 38013259 - 38013351
Alignment:
| Q |
13 |
cagatgacaaaagaaccctactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaaccatcgactgctgtaaca |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| |
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|
| T |
38013259 |
cagatgacaaaagaaccctactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatgggatccaaacacagactgctgcaaca |
38013351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 330 - 436
Target Start/End: Original strand, 38013577 - 38013683
Alignment:
| Q |
330 |
accaacatctccggggagatacctaacactctctcacagatcaaaacactagtaaccatctccttcaatagcaacaaactcaccggtcccctccccgctt |
429 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||||||||||||||||| || || |||| |||| | | ||||||||| || |||||||||||| || |
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| T |
38013577 |
accaacatctccggcgagataccaaacaccctctcacagatcaaaacgctcttacgcatcgacttctacaacaacaaactaactggtcccctccccacta |
38013676 |
T |
|
| Q |
430 |
cactctc |
436 |
Q |
| |
|
||||||| |
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|
| T |
38013677 |
cactctc |
38013683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 37697804 - 37697748
Alignment:
| Q |
31 |
tactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaa |
87 |
Q |
| |
|
|||||||||| || ||||||||||||||||| | | ||||||||||||||||||||| |
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| T |
37697804 |
tactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaa |
37697748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 37993735 - 37993832
Alignment:
| Q |
16 |
atgacaaaagaaccctactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaaccatcgactgctgtaacagtacatgg |
113 |
Q |
| |
|
||||||||| |||||| | ||||| || ||| ||||||||||||| | | ||||||||||||||||| |||| | ||||||||| ||| | |||||| |
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| T |
37993735 |
atgacaaaaaaaccctctttcaaatcaaaaaacaatttggcaacccaaccaaactctcttcatgggattcaactaccgactgctgcaacggaacatgg |
37993832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 531 - 646
Target Start/End: Original strand, 37994244 - 37994359
Alignment:
| Q |
531 |
gggttgcttctctcgcgaaaccgtctctccgggaaggttcctgcgtcactggggaaactaaaccttgctga-tgtggacttgtcacataacgcgtttgag |
629 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||| |||| ||||| |||||||| || || |||| || | ||||||||||| ||||||||| || |
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|
| T |
37994244 |
gggttggatctgtcgcgaaaccgtctctccgggaagattccagcgtctctggggaagctgaa-tttgcagattttggacttgtcatggaacgcgtttaag |
37994342 |
T |
|
| Q |
630 |
ggtgatgcgtccatgtt |
646 |
Q |
| |
|
|||||||| || ||||| |
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|
| T |
37994343 |
ggtgatgcttcaatgtt |
37994359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 182 - 307
Target Start/End: Original strand, 25326317 - 25326445
Alignment:
| Q |
182 |
cctccccaaacctgtcccaattccaacctccatattca---acctccctttcgtaaacttcctctatctcgcctacatgcccaaccttgttggccctatc |
278 |
Q |
| |
|
||||||||||| || | ||||||| |||||||||||| ||||||||||| ||||||| |||| | ||| | |||| |||||||| |||||| ||||| |
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|
| T |
25326317 |
cctccccaaacacgttcaaattccaccctccatattcactaacctccctttcataaactttctctctatcgacaacatccccaacctcgttggcactatc |
25326416 |
T |
|
| Q |
279 |
cctccttccatctccaaactctccaaact |
307 |
Q |
| |
|
|| |||||||||||||||||| ||||||| |
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|
| T |
25326417 |
ccgccttccatctccaaactcaccaaact |
25326445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 18138354 - 18138386
Alignment:
| Q |
18 |
gacaaaagaaccctactccaaataaagaaagaa |
50 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
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|
| T |
18138354 |
gacaaaagaaccctactccaaatcaagaaagaa |
18138386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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