View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16753_low_10 (Length: 296)
Name: NF16753_low_10
Description: NF16753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16753_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 291
Target Start/End: Complemental strand, 37509700 - 37509416
Alignment:
| Q |
7 |
gtgtttgagttgcatatggaagaactgcgtgcaaagcaagaagaaattacgaagcgtgataacgatgttaagcttttggaagcaattattcaaacacttg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37509700 |
gtgtttgagttgcatatggaagaactgcgtgcaaagcaagaagaaattacgaagcgtgataacgatattaagcttttggaagcaattattcaaacacttg |
37509601 |
T |
|
| Q |
107 |
gagggaaagaatgattttctacatctctgtaaaacactaaaacttgttgttcttggtttcgtttgtttatgtgtaaattaagttgttatagttctagtaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37509600 |
gagggaaagaatgattttctacatctctgtaaaacactaaaacttgttgttcttggtttcgttcgtttctgtgtaaattaagttgttatagttctagtaa |
37509501 |
T |
|
| Q |
207 |
gtaaagattgattgttatcttcaacactgtaataaagttgaatttttctataatgaatattttttctgtattagttagttctctg |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37509500 |
gtaaagattgattgttatcttcaacactgtaataaagttgaatttttctataatgagtattttttctgtattagttagttctctg |
37509416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University