View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16753_low_12 (Length: 270)
Name: NF16753_low_12
Description: NF16753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16753_low_12 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 6426041 - 6426298
Alignment:
| Q |
13 |
acttcaaacacatatccttagtcaattcataagctatatgccttattttgttcatattagctttcaagtggaattaaaataaatataaattaagtttggc |
112 |
Q |
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| T |
6426041 |
acttcaaacacatatcattagtcaattcataagctatatgccttattttgttcatattagctttcaagtggaatcaaaataaatataaattaagtttggc |
6426140 |
T |
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| Q |
113 |
ttctgagttgcgacttttggtgccgctattaggcatcggcattccgtcattctgccatggcatagaaatttaacaacactgaagccaactatttgtatta |
212 |
Q |
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| T |
6426141 |
ttctgagttgcgacttttggtgccgctattaggcatcggcattccgtcattctgccatggcatagaaatttaacaacactgaagccaactatttgtatta |
6426240 |
T |
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| Q |
213 |
cattgtacgttatggaattattacgcacatttgtaatatgacattttaaaaaggctat |
270 |
Q |
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| T |
6426241 |
cattgtacgttatggaattattacgcacatttgtaatatgacattttaaaaaggctat |
6426298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 14820143 - 14820287
Alignment:
| Q |
11 |
atacttcaaacacatatccttagtcaattcataagctatatgccttattttgttcatattagctttcaagtggaattaaaataaatataaattaagtttg |
110 |
Q |
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| T |
14820143 |
atacttcaaacacatatcattaatcaattcataagctatacacattatttactatatattagctttcaagttgaatca----aaatataaattaagtttg |
14820238 |
T |
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| Q |
111 |
gcttctgagttgcgacttttggtgccgc--tattaggcatcggcattcc |
157 |
Q |
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| T |
14820239 |
accactgagttgcgacttttggcgccgccatattaggcatcagcattcc |
14820287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 6394394 - 6394476
Alignment:
| Q |
11 |
atacttcaaacacatatccttagtcaattcataagctatatgccttattttgttcatattagctttcaagtggaattaaaata |
93 |
Q |
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| T |
6394394 |
atacttcaaacacatatcattaatcaattcatatgccatatgccttatttacttcatattaactttcaagttggattaaaata |
6394476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 14820319 - 14820390
Alignment:
| Q |
155 |
tccgtcattctgccatggcatagaaatttaacaacactgaagccaactatttgtattacattgtacgttatg |
226 |
Q |
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| T |
14820319 |
tccgtcattcttccatggcatagacattaaacaacactgcagccaactatttttattacatcgtatgttatg |
14820390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 14820415 - 14820456
Alignment:
| Q |
226 |
ggaattattacgcacatttgtaatatgacattttaaaaaggc |
267 |
Q |
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| T |
14820415 |
ggaattataacgcacatttgtaatatgtcattttaaaaaggc |
14820456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 14817860 - 14817917
Alignment:
| Q |
167 |
ccatggcatagaaatttaacaacactgaagccaactatttgtattacattgtacgtta |
224 |
Q |
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| T |
14817860 |
ccatgacatagacattaaacaacaaggcagccaactatttgtattacatcgtacgtta |
14817917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 15092635 - 15092554
Alignment:
| Q |
144 |
ggcatcggcattccgtcattctgccatggcatagaaatttaacaacactgaagccaactatttgtattacattgtacgttat |
225 |
Q |
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| T |
15092635 |
ggcatcggcattctgtcatccggccatggtgtggccttttgacaacactgaagccaactatttgtattgcattgtacattat |
15092554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 15092715 - 15092659
Alignment:
| Q |
37 |
attcataagctatatgccttattttgttcatattagctttcaagtggaattaaaata |
93 |
Q |
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| T |
15092715 |
attcttaagctatatgccttatttactttatattagctttcaagttgaatcaaaata |
15092659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 49218773 - 49218816
Alignment:
| Q |
17 |
caaacacatatccttagtcaattcataagctatatgccttattt |
60 |
Q |
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| T |
49218773 |
caaatacatatcattaatcaattcataagctatatgccttattt |
49218816 |
T |
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