View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16753_low_2 (Length: 521)

Name: NF16753_low_2
Description: NF16753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16753_low_2
NF16753_low_2
[»] chr3 (8 HSPs)
chr3 (13-242)||(28905303-28905532)
chr3 (280-450)||(28905570-28905740)
chr3 (171-242)||(28895075-28895146)
chr3 (177-231)||(28938807-28938861)
chr3 (177-242)||(28928223-28928288)
chr3 (178-242)||(28918473-28918537)
chr3 (298-346)||(28938911-28938959)
chr3 (471-505)||(28905761-28905795)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 9e-96; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 28905303 - 28905532
Alignment:
Q  13 cagaccacatacagagtaaaatctagtcaaaattctgtaactgattttttattttagaatgaaatctnnnnnnnnnnnnnnnntcagtttcatcattcat 112  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||                |||||||||||||||||    
T  28905303 cagaccacatacagagtaaaatctagtcaaaattctgaaactgattttttattttagaatgaaatctaaaataaaaaacaaaatcagtttcatcattcat 28905402  T
Q  113 gatagaaatgtataatcatgcaatgaatgaatgaagtatgagaagaacttaaagaaaatacccaaaatcacagactctcatttcaccaccatctttgcaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28905403 gatagaaatgtataatcatgcaatgaatgaatgaagtatgagaagaacttaaagaaaatacccaaaatcacagactctcatttcaccaccatctttgcaa 28905502  T
Q  213 acaaagcaataatcttcagcaatctcttcc 242  Q
    ||||||||||||||||||||||||||||||    
T  28905503 acaaagcaataatcttcagcaatctcttcc 28905532  T

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Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 280 - 450
Target Start/End: Original strand, 28905570 - 28905740
Alignment:
Q  280 tggagaagaaagaaaggggggtaagaaataaaaataagagctttttataaaagcttcaactcaagtaggttgatgaagagtagtagtagctaaagaaaag 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28905570 tggagaagaaagaaaggggggtaagaaataaaaataagagctttttataaaagcttcaactcaagtaggttgatgaagagtagtagtagctgaagaaaag 28905669  T
Q  380 cgaaattacagaaaatgtgaatgttggattttacagaatgaaacaaaatcgtaaagctaagaaactagtac 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28905670 cgaaattacagaaaatgtgaatgttggattttacagaatgaaacaaaatcgtaaagctaagaaactagtac 28905740  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 28895075 - 28895146
Alignment:
Q  171 tacccaaaatcacagactctcatttcaccaccatctttgcaaacaaagcaataatcttcagcaatctcttcc 242  Q
    |||| ||||||||||| |||||| ||||||||||||||||||| ||||||| ||  ||||||||||||||||    
T  28895075 tacctaaaatcacagattctcatgtcaccaccatctttgcaaataaagcaaaaactttcagcaatctcttcc 28895146  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 28938807 - 28938861
Alignment:
Q  177 aaatcacagactctcatttcaccaccatctttgcaaacaaagcaataatcttcag 231  Q
    |||||||||||||||| |||||||||||||||||| | |||||||||||||||||    
T  28938807 aaatcacagactctcaattcaccaccatctttgcagaaaaagcaataatcttcag 28938861  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 28928223 - 28928288
Alignment:
Q  177 aaatcacagactctcatttcaccaccatctttgcaaacaaagcaataatcttcagcaatctcttcc 242  Q
    |||||||| ||||||| |||||||||||||||||||||||||||  | |||||||| |||||||||    
T  28928223 aaatcacatactctcagttcaccaccatctttgcaaacaaagcaccattcttcagcgatctcttcc 28928288  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 28918473 - 28918537
Alignment:
Q  178 aatcacagactctcatttcaccaccatctttgcaaacaaagcaataatcttcagcaatctcttcc 242  Q
    |||||||||| ||||||| ||||||||||||||||  ||||||| || |||||||||||||||||    
T  28918473 aatcacagaccctcatttgaccaccatctttgcaagaaaagcaacaaccttcagcaatctcttcc 28918537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 28938911 - 28938959
Alignment:
Q  298 gggtaagaaataaaaataagagctttttataaaagcttcaactcaagta 346  Q
    ||||||||||||||||| |||| |||||| |||||||||||||||||||    
T  28938911 gggtaagaaataaaaatgagaggtttttaaaaaagcttcaactcaagta 28938959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 505
Target Start/End: Original strand, 28905761 - 28905795
Alignment:
Q  471 cagtgtaagttgaacgaatgaaaaaatgagagaag 505  Q
    |||||||||||||||||||||||||||||||||||    
T  28905761 cagtgtaagttgaacgaatgaaaaaatgagagaag 28905795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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