View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16753_low_6 (Length: 403)
Name: NF16753_low_6
Description: NF16753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16753_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 179 - 387
Target Start/End: Complemental strand, 48888367 - 48888159
Alignment:
| Q |
179 |
ggtgattaagctctcaagaatgttaaaccagtacagaatcgatttcacattgcaatcttatatacaattctggccaaaagaaaaaagacgaaatttttat |
278 |
Q |
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| T |
48888367 |
ggtgattaagctctcaacaatgttaaaccagtacagaatcgatttcacattgcaatcttatatacaattctggccaaaagaaaaaagacgaaatttttat |
48888268 |
T |
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| Q |
279 |
caatgtcaacataataaaacagtaacattcaaacacaacctggagttcacctgtttactgtcaggactccaactaactgcatatatgctgcccttgtgac |
378 |
Q |
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| T |
48888267 |
caatgtcaacataataaaacagtaacattcaaacacaacctggagttcacctgtttactgtcacgactccaactaactgcatatatgctgcccttgtgac |
48888168 |
T |
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| Q |
379 |
cgtcctctt |
387 |
Q |
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||||||||| |
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| T |
48888167 |
cgtcctctt |
48888159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 48888536 - 48888425
Alignment:
| Q |
9 |
agcagagacagtaagaacctgtaannnnnnnnacttaatttaaactagaatgtaaatagcagcactgaacatctaaaatagcacaaataaattcataaca |
108 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
48888536 |
agcagagacagtaagaacctgtaattttttttacttaatttaaactagaatgtaaatagcagtactgaacatctaaaatagcacaaataaattcataaca |
48888437 |
T |
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| Q |
109 |
tgttcctcctta |
120 |
Q |
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| T |
48888436 |
tgttcctcctta |
48888425 |
T |
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