View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_high_12 (Length: 485)
Name: NF16754_high_12
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 113 - 467
Target Start/End: Original strand, 3960621 - 3960964
Alignment:
| Q |
113 |
aagacagcagcaaggcaaaaacccaaaccgcttgcagagctcccaacggactaatgaaacagtcctaaaaccaaatcacggcagaccccagggcccagac |
212 |
Q |
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| T |
3960621 |
aagatagcagcaaggcaaaaacccgaaccgcttgcagagctcccaacggactaatgaaatagtcccaaaaccgaatcaaggaaaaccccag-------ac |
3960713 |
T |
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| Q |
213 |
agcaacccctattacctcaaaaggcaatccttcggattccaaatccactgactcgtagaacaaacaagtcaagatgttcaacctctccaaactccaccgc |
312 |
Q |
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| T |
3960714 |
cgcgactcctattacctcaaaaggcaatccttcagattccacatccact----cgtagcacaaacaagtcaggatgttcaacctctccaaactccaccgc |
3960809 |
T |
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| Q |
313 |
taagataaaactttcaccgcctccgcaatatcttccactgcactaacctcgttcttaaaaatgatttgattcctcgtttgccaaatggccgaaatcgttg |
412 |
Q |
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| T |
3960810 |
taagataaaactttcaccgcctccacaatatcttccaccgcactaacctcgttcttaaaaatgatttgatttctcgcttgccaaatggcccaaatcattg |
3960909 |
T |
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| Q |
413 |
catgccaaataagatgcaaacccttccggatcctcttgtttctaccttctaaact |
467 |
Q |
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| T |
3960910 |
catgccaaataagacgcaaatccttctggatcctcttgtttctaccttttaaact |
3960964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 3960230 - 3960316
Alignment:
| Q |
115 |
gacagcagcaaggcaaaaacccaaaccgcttgcagagctcccaacggactaatgaaacagtcctaaaaccaaatcacggcagacccc |
201 |
Q |
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| T |
3960230 |
gacagcagcaaggcagaaacccgagccgctggcagagctcccaactgactaatgaaacagtcccaaaaccgaatcacgtcaaacccc |
3960316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 3960562 - 3960604
Alignment:
| Q |
83 |
ggaaaaaacgcgctcagctctgcgcaaactaagacagcagcaa |
125 |
Q |
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| T |
3960562 |
ggaaaaaacgcgctcagctctgcgcaaactaagacagcagcaa |
3960604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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