View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_high_15 (Length: 450)
Name: NF16754_high_15
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 9e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 5 - 166
Target Start/End: Original strand, 47710455 - 47710620
Alignment:
| Q |
5 |
atgaacctcaatatgcttgagaaattaaattattaatcgtttcactaacaaaaatataaattagagtttctttgcaatcttcctttaattgctaaaactt |
104 |
Q |
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| T |
47710455 |
atgaacctcaatatgcttgagaaattaaattattaatcgcttcactaacaaaaatataaattagagcttctttgcaatcttcctttaattgctaaaactt |
47710554 |
T |
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| Q |
105 |
ctaa----tatgctaactattgtacagaaaaatgataataatgctattaatatcacagccactact |
166 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47710555 |
ctaatatgtatgctaactattgtacagaaaaatgataataatgctattaatatcacagccactact |
47710620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 5 - 161
Target Start/End: Original strand, 39492921 - 39493081
Alignment:
| Q |
5 |
atgaacctcaatatgcttgagaaattaaattattaatcgtttcactaacaaaaatataaattagagtttctttgcaatcttcctttaattgctaaaactt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39492921 |
atgaacctcaatatgcttgagaaattaaattattaatcgtttcactaacaaaaatataaattagagcttctttgcaatcttcctttaattgctaaaactt |
39493020 |
T |
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| Q |
105 |
ctaa----tatgctaactattgtacagaaaaatgataataatgctattaatatcacagcca |
161 |
Q |
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| T |
39493021 |
ctaatatgtatgctaactattgtacagaaaaatgataataatgctattaatatcacagcca |
39493081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 5 - 161
Target Start/End: Complemental strand, 35839339 - 35839179
Alignment:
| Q |
5 |
atgaacctcaatatgcttgagaaattaaattattaatcgtttcactaacaaaaatataaattagagtttctttgcaatcttcctttaattgctaaaactt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35839339 |
atgaacctcaatatgcttgagaaattaaattattaatcgtttcactaacaaaaatataaattagagcttctttgcaatcttcctttaattgctaaaactt |
35839240 |
T |
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| Q |
105 |
ctaa----tatgctaactattgtacagaaaaatgataataatgctattaatatcacagcca |
161 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35839239 |
ctaatatgtatgctaactattgtacagaaaaatgataataatgctattaatatcacagcca |
35839179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 161 - 336
Target Start/End: Original strand, 44356339 - 44356516
Alignment:
| Q |
161 |
actacttcctttgttattttaccttgtaccaagtgagagtaacttcatcaatcatgacatcccccaattgagtccattcaatgtctgtgctattttgaac |
260 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| |||||||||||||||||| | |
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| T |
44356339 |
actacttcctgttttattttaccttgtaccaagtgagagtaacttcatcaatcgtgatattccccaattgagtccatttaatgtctgtgctattttgttc |
44356438 |
T |
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| Q |
261 |
tgtatatacttctaagtgctctccaagtaatccaacc--tatagtgcacaagattgatgaaaaagttgacacacatat |
336 |
Q |
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||||||||||| ||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
44356439 |
tgtatatacttttaattgctctccaagtaatccaacctatatagtacacaagattgatgaaaaagttgacacacatat |
44356516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 5031433 - 5031464
Alignment:
| Q |
5 |
atgaacctcaatatgcttgagaaattaaatta |
36 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
5031433 |
atgaacctcaatatgcttgagaaattaaatta |
5031464 |
T |
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