View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_high_17 (Length: 441)
Name: NF16754_high_17
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 432
Target Start/End: Complemental strand, 38197965 - 38197546
Alignment:
| Q |
13 |
tacatgatattgctcgagaatcgccaacatttataactagtagctttactccattaattagtattgctgccacagctgttgatcctccacgccaatcggc |
112 |
Q |
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| T |
38197965 |
tacatgatattgctcgagaatcgccaacatttataactagtagctttactccattaattagtattgctaccacagctgttgatcctccacgccaatcggc |
38197866 |
T |
|
| Q |
113 |
tatgttttctaaaatctcgttgtctgtagctttacatgctttcttaacagcatgcactggattctcccagaaatcaggctatccatgcatgattaagaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38197865 |
tatgttttctaaaatctcgttgtctgtagctttacatgctttcttaacagcatgcactggattctcccagaaatcaggctatccgtgcatgattaagaaa |
38197766 |
T |
|
| Q |
213 |
tcaaatggaagtgagaataataatgtgtagacagaaatatataatatatcaattactaaattatatacctcactcaatatattttggaatagatggttgt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
38197765 |
tcaaatggaagtgagaataataatgtgtagacagaaatatataatatatcgattactaaagtatatacctcactcaatatattttggaatagatggtttt |
38197666 |
T |
|
| Q |
313 |
gcaaatattttgcaacatcaggaccagcgtgtccatcaaatattgcatacagtcctaaatcatatccattgagcttcctgtgttgagcaaaaacatagtc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38197665 |
gcaaatattttgcaacatcaggaccagcgtgtccatcaaatattgcatacagtcctaaatcatatccattgagcttcctgtgttgagcaaaaacatagtc |
38197566 |
T |
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| Q |
413 |
ctccattccatggttcatct |
432 |
Q |
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|||||||||||||||||||| |
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| T |
38197565 |
ctccattccatggttcatct |
38197546 |
T |
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