View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_high_23 (Length: 392)
Name: NF16754_high_23
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_high_23 |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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| [»] scaffold0177 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 108520 - 108605
Alignment:
| Q |
22 |
ctatcaacaccgagagtagcactggagaatagaaaacaacatccttccatcaaaccaatagcagtaacacggctcgtaaaaaacaa |
107 |
Q |
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| T |
108520 |
ctatcaacaccaagagtagcaccggagaatagaaaacaacatccttccatcaaaccaatagcagcaacacgcctcatcaaaaacaa |
108605 |
T |
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Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 11994711 - 11994628
Alignment:
| Q |
36 |
agtagcactggagaatagaaaacaacatccttccatcaaaccaatagcagtaacacggctcgtaaaaaacaaaacaccgcttta |
119 |
Q |
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| T |
11994711 |
agtagcactggagaatagcaaacaacatccttccatcaaaccaatagcagcaacacgcctcatcaaaaacaagacaccgcttta |
11994628 |
T |
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Target: scaffold0014 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 141758 - 141699
Alignment:
| Q |
22 |
ctatcaacaccgagagtagcactggagaatagaaaacaacatccttccatcaaaccaata |
81 |
Q |
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| T |
141758 |
ctatcaacaccaagagtagcactggagaatggcaaacaacattcttccataaaaccaata |
141699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 29952 - 29835
Alignment:
| Q |
22 |
ctatcaacaccgagagtagcactggagaatagaaaacaacatccttccatc--aaaccaatagcagtaacacggctcgtaaaaaacaaaacaccgcttta |
119 |
Q |
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| T |
29952 |
ctatcaataccaagagtagcactagagaacagcaaactgcatccttccatccaataccaatagcagcaacacacatcataaaaaacaggttaccacttta |
29853 |
T |
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| Q |
120 |
tgaagtgcgtaaatatct |
137 |
Q |
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| T |
29852 |
tgaagtgcgtgaatatct |
29835 |
T |
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