View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16754_high_24 (Length: 391)
Name: NF16754_high_24
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_high_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 142 - 375
Target Start/End: Complemental strand, 54147373 - 54147142
Alignment:
| Q |
142 |
tcatagaccaacacaattttgcagacattgagaagactagttaccaatgccatgttatcacaacaatgaagcctactaactcccaagcaccaaaaaacca |
241 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
54147373 |
tcatagaccaacacaattttgtagacattgagaagactagttaccaatgccatgttatcacaacaatgaagcctactaactcccaagcactaaaaaacca |
54147274 |
T |
|
| Q |
242 |
atttatgcttaggtacactaccttcaccattagaaatttatcggtctcccaatcaaaacaaaaaagcaacatgctaatcaaccaataggaactaattttg |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54147273 |
atttatgcttaggtacactaccttcaccattataaatttatcggtctcccaatcaaaac--aaaagcaacatgctaatcaaccaataggaactaattttg |
54147176 |
T |
|
| Q |
342 |
accagcaaattaaatgagaaaaagaagaaacaaa |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
54147175 |
accagcaaattaaatgagaaaaagaagaaacaaa |
54147142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 24487454 - 24487524
Alignment:
| Q |
154 |
acaattttgcagacattgagaagactagttaccaatgccatgttatcacaacaatgaagcctactaactcc |
224 |
Q |
| |
|
|||||||| |||||| ||||||||||| ||| ||| |||||| |||||||| |||||||||||||||| |
|
|
| T |
24487454 |
acaattttacagacaacgagaagactagatacaaatatcatgttgccacaacaaagaagcctactaactcc |
24487524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 24487555 - 24487600
Alignment:
| Q |
260 |
taccttcaccattagaaatt-tatcggtctcccaatcaaaacaaaa |
304 |
Q |
| |
|
||||||||||| |||| ||| ||||||||||||||||||||||||| |
|
|
| T |
24487555 |
taccttcaccactagatattctatcggtctcccaatcaaaacaaaa |
24487600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University