View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16754_high_25 (Length: 390)
Name: NF16754_high_25
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_high_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 43225878 - 43226026
Alignment:
| Q |
18 |
actatacactaaatatttgtcaagaattcattttaatttt--cactatattgaaaagttgattaaattgcaacataatttaggttgttgcaattttgaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43225878 |
actatacactaaatatttgtcaagaattgattttaattttttcactatattgaaaagttgattaaattgcaacataatttaggttgttgcaattttgaac |
43225977 |
T |
|
| Q |
116 |
acaaaagactcaaaagattaaagatgcaagtgtaacctgcaacaaagaagttaacaca |
173 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43225978 |
a---------caaaagattaaagatgcaagtgtaacctgcaacaaagaagttaacaca |
43226026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 312 - 382
Target Start/End: Original strand, 43226208 - 43226278
Alignment:
| Q |
312 |
atattcctttggttttgaccaaaaacataacaactctcgaattacctcttttgatggagaataatctaccc |
382 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| || |||||| |
|
|
| T |
43226208 |
atattcctttggttttgaccaaaaatataacaactctcaaattacctcttttgatggagaagaagctaccc |
43226278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 43258626 - 43258694
Alignment:
| Q |
20 |
tatacactaaatatttgtcaagaattcattttaattttcactatattgaaaagttgattaaattgcaaca |
89 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
43258626 |
tatacactaaatgtttgttaagaattcattttaattttcactacatt-aaaagttgattaaattgcaaca |
43258694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 43226065 - 43226124
Alignment:
| Q |
254 |
ctagtacaagtgtttcgtatctaaatcaaattatgaaaccactaatttaaaggtaaggat |
313 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
43226065 |
ctagtaaaagtgtttcgtatctaaatcaaattatgaaagcactaaattaaaggtaaggat |
43226124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 361
Target Start/End: Original strand, 43241958 - 43242007
Alignment:
| Q |
312 |
atattcctttggttttgaccaaaaacataacaactctcgaattacctctt |
361 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
43241958 |
atatttctttggttttgaccataaacataacaactctcaaattacctctt |
43242007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University