View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_high_27 (Length: 386)
Name: NF16754_high_27
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 15 - 367
Target Start/End: Original strand, 32834561 - 32834917
Alignment:
| Q |
15 |
agcacagaaaccgaaccaggatccaccgcatcaagatagagagaagacgttcctctggggcatcactgtcgccctagtcatttcccaaatctttacactg |
114 |
Q |
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| T |
32834561 |
agcacagaaaccgaaccaggatccaccgcatcaagatagagagaagacgttcctctggggcatcactgtcgccctagtcatttcccaaatctttacactg |
32834660 |
T |
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| Q |
115 |
gtatgcttct----ttctttctttctttgatttatttatctttgtacttgtgaatataaataaatattcctaaagaaagataatggtgttggtatcgaat |
210 |
Q |
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| T |
32834661 |
gtatgcttctttctttctttctttctttgatttatttatctttgtacttgtgaatataaataaattttcctaaagaaagataatggtgttggtatcgaat |
32834760 |
T |
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| Q |
211 |
gtatttgtctgtgtagttagtatcttatcatatgcatggaatctatatatgttccttaattcatttttatacatgccttggatttttactatgaccgggg |
310 |
Q |
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| T |
32834761 |
gtatttgtctgtgtagttagtatcttatcatatgcatggaatctatgtatgttccttaattcatttttatacatgccttggatttttactatgaccgggg |
32834860 |
T |
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| Q |
311 |
tttcaactttcaagatttatatgtattgagtttttggaatatcactagaatttattt |
367 |
Q |
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| T |
32834861 |
tttcaattttcaagatttatatgtattgagtttttggaatatcactagaatttattt |
32834917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 367
Target Start/End: Original strand, 32840943 - 32841296
Alignment:
| Q |
19 |
cagaaaccgaaccaggatccaccgcatcaagatagagagaagacgttcctctggggcatcactgtcgccctagtcatttcccaaatctttacactggtat |
118 |
Q |
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| T |
32840943 |
cagaaaccgaaccaggctccaccgcagcaagatagagagaagacgttcctcaggggcatcacagtcgccttagtcatttcccaaatccttacactggtat |
32841042 |
T |
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| Q |
119 |
gcttctttctttctttc-----tttgatttatttatctttgtacttgtgaatataaataaatattcctaaagaaagataatggtgttggtatcgaatgta |
213 |
Q |
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| T |
32841043 |
gtgtctttctttctttcattcttttgatttatttatctttgtacgtgtgaatataaataaagactcctcaagaaagataattgtgttggtattgaatgta |
32841142 |
T |
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| Q |
214 |
tttgtctgtgtagttagtatcttatcatatgcatggaatctatatatgttccttaattcatttttatacatgccttggatttttactatgaccggggttt |
313 |
Q |
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| T |
32841143 |
tttgtctgcgtagttagtatcttattgtatgcatgcaatctatatatgctcctcaattcatttttatacatgccttggatttttactatgaccagggttt |
32841242 |
T |
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| Q |
314 |
caactttcaagatttatatgtattgagtttttggaatatcactagaatttattt |
367 |
Q |
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| T |
32841243 |
caactttcaagatttatatgtattgagtttttggaatatcacaagaatttattt |
32841296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 31661789 - 31661713
Alignment:
| Q |
229 |
agtatcttatcatatgcatggaatctatatatgttccttaattcatttttatacatgccttggatttttactatgac |
305 |
Q |
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| T |
31661789 |
agtatcttatcatgtgcatgcaatctatatatgttcctcaattcatttttatacatgccttggattttcactatgac |
31661713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 31683255 - 31683179
Alignment:
| Q |
229 |
agtatcttatcatatgcatggaatctatatatgttccttaattcatttttatacatgccttggatttttactatgac |
305 |
Q |
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||||||||||||| |||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
31683255 |
agtatcttatcatgtgcatgcaatctatacatgttcctcaattcatttttatacatgccttggattttcactatgac |
31683179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 273 - 367
Target Start/End: Original strand, 7479345 - 7479438
Alignment:
| Q |
273 |
atttttatacatgccttggatttttactatgaccggggtttcaactttcaagatttatatgtattgagtttttggaatatcactagaatttattt |
367 |
Q |
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||||||||| |||||||||||||||||||||| | | |||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |
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| T |
7479345 |
atttttatatttgccttggatttttactatgacagag-tttcaactttcaagatatatatgtattgagtttttggaatttcacaagaatttattt |
7479438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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