View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_high_43 (Length: 284)
Name: NF16754_high_43
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 8674206 - 8674481
Alignment:
| Q |
1 |
tctatggatttacttaatctctattataatctacacataatatgttaatataatgcgtgcttaattaaccgaccagctacaatgcgtgcttatattcttt |
100 |
Q |
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| T |
8674206 |
tctatggatttacttaatctctattataatctacacataatatgttaatataatgcgtgcttaattaaccgaccagctacaatgcgtgcttatattcttt |
8674305 |
T |
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| Q |
101 |
cacttcatgcttagtgcaactcatttcacgcataatgcacttgaataaaggcaacatgggcaaagaaagaaaatagatttatgtttaatgcatgtgcggt |
200 |
Q |
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| T |
8674306 |
cacttcatgcttagtgcaactcatttcacgcataatgcacttgaataaaggcaacatgggcaaagaaacaaaatagatttatgtttaatgcatgtgcggt |
8674405 |
T |
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| Q |
201 |
tttgaccnnnnnnnttcatgtgggaacatgtgaggaattttctatttaagtaacaccccccattagcattctcatc |
276 |
Q |
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| T |
8674406 |
tttgaccaaaaaatttcatgtgggaacatgtgaggaattttctatttaagtaacacaccccattagcattttcatc |
8674481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 3 - 167
Target Start/End: Complemental strand, 8688255 - 8688075
Alignment:
| Q |
3 |
tatggatttacttaatctctattataatctacacataa----tatgttaatataatgcgtgcttaattaaccgaccagctacaatgcgtgcttatatt-- |
96 |
Q |
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| T |
8688255 |
tatggatttacttaatctctattataatctacacatcaatattatggtaatataatgcgttcttaattaaccgaccagctataatgcgtgcttagtttgt |
8688156 |
T |
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| Q |
97 |
----------ctttcacttcatgcttagtgcaactcatttcacgcataatgcacttgaataaaggcaacatgggcaaagaa |
167 |
Q |
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| T |
8688155 |
tataatatggatttcacttcatgcttggtgcaactcattgcacgcataatgcacttgaataaaggtaacatgggccaagaa |
8688075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 8688291 - 8688260
Alignment:
| Q |
1 |
tctatggatttacttaatctctattataatct |
32 |
Q |
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| T |
8688291 |
tctatggatttacttaatctctattataatct |
8688260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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