View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_high_48 (Length: 257)
Name: NF16754_high_48
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_high_48 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 50965358 - 50965102
Alignment:
| Q |
1 |
cagggtgaacacagtgtgttactggagttatcaacattgttatgtaatggcatgcccaacaagcagaagaagtcgtgtgatgaatagttgatgcatgtgg |
100 |
Q |
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| T |
50965358 |
cagggtgaacacagtgtgttactggagttatcaacattgttatgtaatggcatgcccaacaagcagaagaagtagtgtgatgaatagttgatgcatgtgg |
50965259 |
T |
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| Q |
101 |
agtacaactccaaattgttagcatagaaaccaacatgacatgataagtaaccaaatagctggcacagatatgattatgtaatggcatctttgttaagtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50965258 |
agtacaactccaaattgttagcatagaaaccaacatgacatgataagtaaccaaatagctggcacagatatgattatgtaatggcatctttgttaagtga |
50965159 |
T |
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| Q |
201 |
ccaaaagcatagaaaccaacatgtcagaaccacaggcagagtacattagcattcaga |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50965158 |
ccaaaagcatagaaaccaacatgtcagaaccacaggcagagtacattagcattcaga |
50965102 |
T |
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