View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_high_55 (Length: 234)
Name: NF16754_high_55
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_high_55 |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 9569968 - 9569814
Alignment:
| Q |
19 |
aaacagaagaaaactcgaccgcagcaaagtttgctaggctgcaaggaagccgcacaaaacaagcctggaggctcgacagaaaaacggtgggatcgaccca |
118 |
Q |
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| T |
9569968 |
aaacagaagaaaacacgacagcggtaaactttgccaggccacaaggaagccgcaaaaaacaagcctggaggctgcccagaaaaacggtgggatcgaccga |
9569869 |
T |
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| Q |
119 |
agaaacttccagaacccccactgccaaacagtaaccacaaaccagaaaaacagca |
173 |
Q |
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| T |
9569868 |
agaaacttccagaacccccactgccaaacagtaaccacataccagaaagacagca |
9569814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 94 - 230
Target Start/End: Original strand, 9606009 - 9606145
Alignment:
| Q |
94 |
acagaaaaacggtgggatcgacccaagaaacttccagaacccccactgccaaacagtaaccacaaaccagaaaaacagcaccagatgagccaaaaacaaa |
193 |
Q |
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| T |
9606009 |
acagaaaaacagtgggattgacccaagaaacttccagaacccccaccgccaaacagcaaccacagaccagaaaagcagcaacagatgagccaaaaacaga |
9606108 |
T |
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| Q |
194 |
accatatatgcatcagcgacgatacaaggataatggc |
230 |
Q |
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| T |
9606109 |
aggacataagcatcagcaacgatacaaggataatggc |
9606145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 9602197 - 9602264
Alignment:
| Q |
167 |
aacagcaccagatgagccaaaaacaaaaccatatatgcatcagcgacgatacaaggataatggcccgc |
234 |
Q |
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| T |
9602197 |
aacagcaccagatgagccaaaaacaaaaccatatatgcatcagcgacgatacaaggataatggcccgc |
9602264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 9593315 - 9593407
Alignment:
| Q |
62 |
aggaagccgcacaaaacaagcctggaggctcgacagaaaaacggtgggatcgacccaagaaacttccagaacccccactgccaaacagtaacc |
154 |
Q |
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| T |
9593315 |
aggaagccgcacaaaacaagcctgaaagctgcacataaaaacggtgggatagactcaagacacttccagaacccccactgccaaacagcaacc |
9593407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 231
Target Start/End: Original strand, 9581509 - 9581683
Alignment:
| Q |
50 |
tgctaggctgcaaggaagccgcacaaaacaagcctggaggctcgacagaaaaacggtgggatcgacccaagaaacttccagaacccccactgccaaaca- |
148 |
Q |
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| T |
9581509 |
tgctaggccgcaaggaagccacacacaacaagcctgaacgctgcacagaaaaacggtgggatcgacccaggaaacttccaga----cca--gaaaaacag |
9581602 |
T |
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| Q |
149 |
gtaaccacaaaccagaaaaacagcaccagatgagccaaaaacaaaaccatatatgcatcagcgacgatacaaggataatggcc |
231 |
Q |
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| T |
9581603 |
gcaacagcagaccag-aaaacagcaccagatgagcc-aaaacagaaccacagaatcatcagcgacgatacaaggacaatggcc |
9581683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 231
Target Start/End: Original strand, 9587204 - 9587378
Alignment:
| Q |
50 |
tgctaggctgcaaggaagccgcacaaaacaagcctggaggctcgacagaaaaacggtgggatcgacccaagaaacttccagaacccccactgccaaaca- |
148 |
Q |
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| T |
9587204 |
tgctaggccgcaaggaagccacacacaacaagcctgaacgctgcacagaaaaacggtgggatcgacccaggaaacttccaga----cca--gaaaaacag |
9587297 |
T |
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| Q |
149 |
gtaaccacaaaccagaaaaacagcaccagatgagccaaaaacaaaaccatatatgcatcagcgacgatacaaggataatggcc |
231 |
Q |
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| T |
9587298 |
gcaacagcagaccag-aaaacagcaccagatgagcc-aaaacagaaccacagaatcatcagcgacgatacaaggacaatggcc |
9587378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 9569780 - 9569732
Alignment:
| Q |
186 |
aaaacaaaaccatatatgcatcagcgacgatacaaggataatggcccgc |
234 |
Q |
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|||||| ||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
9569780 |
aaaacagaaccacataagcatcagcgacgatacaaggataatggcccgc |
9569732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 9593409 - 9593468
Alignment:
| Q |
175 |
cagatgagccaaaaacaaaaccatatatgcatcagcgacgatacaaggataatggcccgc |
234 |
Q |
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| T |
9593409 |
cagatgagcaaaaaacaaaaccacataagcatgagcaacaatacaaggataatgacccgc |
9593468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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