View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_high_56 (Length: 218)
Name: NF16754_high_56
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_high_56 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: scaffold0013 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 92579 - 92777
Alignment:
| Q |
1 |
tagtagatatcttcctgttgagcataaaatggaccattatccctcatacgttaaagagatgtgtaaattcatatacactgtcatgaattagagacaaaga |
100 |
Q |
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| T |
92579 |
tagtagatatcttcctgttgagcataaaatggaacattatccctcatacgttaaagagatgtgtaaattcata--cactgtcatgaattagagacaaaga |
92676 |
T |
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| Q |
101 |
gtctcacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctcaactgtaagatgagtggtgtgat |
200 |
Q |
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| T |
92677 |
gcctcacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctcaactgtaagacgagtggtgtgat |
92776 |
T |
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Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 103639 - 103525
Alignment:
| Q |
86 |
aattagagacaaagagtctcacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctcaactgtaa |
185 |
Q |
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| T |
103639 |
aattaaagacaatgactctcacctttgcacataggtgacgtgatttcgtccagttaattttttcataaggctgagtatggagttcttctctcaactgtaa |
103540 |
T |
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| Q |
186 |
gatgagtggtgtgat |
200 |
Q |
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| T |
103539 |
gatgagtggtgtgat |
103525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 164667 - 164491
Alignment:
| Q |
23 |
cataaaatggaccattatccctcatacgttaaagag-atgtgtaaattcatatacactgtcatgaattagagacaaagagtctcacctttgcacataggt |
121 |
Q |
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| T |
164667 |
cataaaatggatcattatccctcctatgttaaaaaggatgtgtaatttcaca--cattgtgatcaattaaagataaagactctaacctttgcacataggt |
164570 |
T |
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| Q |
122 |
ggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctcaactgtaagatgagtggtgtgat |
200 |
Q |
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| T |
164569 |
gacgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagatgagtggtgtgat |
164491 |
T |
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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 105 - 201
Target Start/End: Original strand, 12137677 - 12137773
Alignment:
| Q |
105 |
cacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctcaactgtaagatgagtggtgtgatt |
201 |
Q |
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| T |
12137677 |
caccttcgcacactggtgacgtgcttttttccaattaacttttgcataaggttcagtatagagttcttctctcaactgtaagatgagcggtgtgatt |
12137773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 13052548 - 13052449
Alignment:
| Q |
102 |
tctcacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctcaactgtaagatgagtggtgtgatt |
201 |
Q |
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| T |
13052548 |
tctcacctttgcacattggtgacgtgatttgaaccaatcaactttttcgtaaggttgattatgaatttcttctctcaactgtaagatgagtggtgtgatt |
13052449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 5670357 - 5670451
Alignment:
| Q |
103 |
ctcacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctcaactgtaagatgagtggtgt |
197 |
Q |
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| T |
5670357 |
ctcacctttgcacatagatggcgtactttttgccaattaactttttcataatgttctgtaaggagttcttctctcaactttaagatgagtggtgt |
5670451 |
T |
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Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 5722471 - 5722569
Alignment:
| Q |
103 |
ctcacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctcaactgtaagatgagtggtgtgatt |
201 |
Q |
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|||||||||||||||||||| ||| |||||| ||| |||||||| ||||||||| ||| | |||||||||||||||| |||||| | |||||||||| |
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| T |
5722471 |
ctcacctttgcacataggtgacgtactttttgccaattaactttttcataaggttctgtaaggagttcttctctcaactttaagatcaatggtgtgatt |
5722569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 5692131 - 5692229
Alignment:
| Q |
103 |
ctcacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctcaactgtaagatgagtggtgtgatt |
201 |
Q |
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||||||||||||||||| |||||| |||||| ||| |||||||| ||||||||| ||| | |||||||||||||||| |||| | | |||||||||| |
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| T |
5692131 |
ctcacctttgcacatagatggcgtactttttgccaattaactttttcataaggttctgtaaggagttcttctctcaactttaaggtcaatggtgtgatt |
5692229 |
T |
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