View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_high_9 (Length: 521)
Name: NF16754_high_9
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 6 - 519
Target Start/End: Original strand, 51962175 - 51962679
Alignment:
| Q |
6 |
agatctatttctagttgtttgtatgaatttcagaaaataaagaagacctacaaagtgggcaagagaattgacttcgttcaagccattgctcaatgcaatt |
105 |
Q |
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| T |
51962175 |
agatctatttctagttgtttgtatgaatttcagaaaataaagaagacctacaaagtgggcaagagaattgacttcgttcaagccattgattaatgcaatt |
51962274 |
T |
|
| Q |
106 |
aaaatgaaacacatgcccacatctcctcaacttgctcactccatcttccctctcaaactcaactaaacaaatggaacaaatctcatcttcatctccgtct |
205 |
Q |
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| T |
51962275 |
aaaatgaaacacatgcccacatctcctcaacttgctcactccatcttccctctcaaactcaactaaacaaatggaacaaatctcatcttcatctccgtct |
51962374 |
T |
|
| Q |
206 |
aaatcctcgaatcgcactgccggtaaggatggaatatctggaaattccatctctttggctgtacatttactttcataagaaaagaaaaacatgaggatga |
305 |
Q |
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| T |
51962375 |
aaatcctcgaatcgcactgccggtaaggatggaatatctggaaattccatctctttggctgtacatttactttcataagaaaagaaaaacatgaggatga |
51962474 |
T |
|
| Q |
306 |
ggccaaatatgtttgcaagtgacatcttgagttgcttcaatgggatgaaaacacatgtgtacaacacaattgtcactatccacaacctagattgacaaac |
405 |
Q |
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| T |
51962475 |
ggccaaatatgtttgcaagtgacatcttgagttgcttcaatgggatgaaaacacatgtgtacaacacaattgtcactatccacaacctagattgacaaac |
51962574 |
T |
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| Q |
406 |
cacaagacaattcatcctcaactagctaggagtaatatattaacttatatcttaaaattgcaatgcaatgcctgaattaaaagcctctctacactctaga |
505 |
Q |
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| T |
51962575 |
cacaagacaattcatcctcaa----ctaggagtaatatattaacttatatcttaaaat-----tacaatgcctgaattaaaagcctctctacactctaga |
51962665 |
T |
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| Q |
506 |
tctgtgtctctgtg |
519 |
Q |
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| T |
51962666 |
tctgtgtctctgtg |
51962679 |
T |
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