View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_low_1 (Length: 759)
Name: NF16754_low_1
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 614; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 18 - 747
Target Start/End: Original strand, 12623408 - 12624141
Alignment:
| Q |
18 |
atttattgcattttcaacctcttagtttgatttgagtcttggaagcaaataggagatttggcatgtacctttttatggcctgaactccttcattgaagat |
117 |
Q |
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| T |
12623408 |
atttattgcattttcaacctcttagtttgatttgagtcttggaagcaaataggagatttggcatgtacctttttatggcctgaactccttcattgaagat |
12623507 |
T |
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| Q |
118 |
caagatcacatatgggcattcctatgacttggttaatgtcttggaggtttatattgtgtatattgaagttgtagtacaaaatgtttttaggagttggaag |
217 |
Q |
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| T |
12623508 |
caagatcacatatgggcattcctatgacttggttaatgtcttggaagtttatattgtgtatattgaagtcgtagtacaagatgtttttaggagttggaag |
12623607 |
T |
|
| Q |
218 |
agtctgagtcatcaagtttttcagcgtgtttttctcttcttcctagtgtgcggtgtgttggttgttgggactatgttgcttggagttggttatgcgcagc |
317 |
Q |
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| T |
12623608 |
agtctgagtcatcaagtttttcagcgcgtttttctcttctttctagtgtgcggtgtgttggttgttggggctatgttgcttggagttggttatgcgcagc |
12623707 |
T |
|
| Q |
318 |
tattttttctgttgatgttgctgctgcatatttgtgcagtctgcaannnnnnnnnnnnngtggccttcagtttggtcgagacttgtagaggcgtgttggc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12623708 |
tattttttctgttgatgttgctgctgcatatttgtgcagtctgcaatttttttttttttgtggccttcagtttggtcgagacttgtagaggcgtgttggc |
12623807 |
T |
|
| Q |
418 |
tctgtccgactaagccggtttgttcatagaatgaagtttgatttggtattaagttaatgctactaacaaataacaatatgtatcaagttgagggttgata |
517 |
Q |
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| T |
12623808 |
tctgtccgactaagccggtttgttcatagaatgaagtttgatttggtatttagttaatgctactaacaaataacaatatgtatcaagttgagggttgata |
12623907 |
T |
|
| Q |
518 |
ttttatttgttctctaggagggacactgcttattgtgaaagaactctcttgtgcaa----atgtccactttgagcaattcttatgctcgagtagtaataa |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12623908 |
ttttatttgttctctaggagggacactgcttattgtgaaagaactctcttgtgcaaatttatgtccactttgagcaattcttatgctcgagtagtaataa |
12624007 |
T |
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| Q |
614 |
ataaaaaatttccttttnnnnnnnntggaaatttatttgcatcatagcttttaaatgttggtaacatgtttgtccaagtttttgtattttttatgttcat |
713 |
Q |
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|||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12624008 |
ataaaattttgccttttaaaaaaaatggaaatttatttgcatcatagcttttaaatgttggtaacatgtttgtccaagtttttgtattttttatgttcat |
12624107 |
T |
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| Q |
714 |
tctttgtctgatgttgattcttctacctatgctt |
747 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
12624108 |
tctttgtctgatgttgattcttctacctatgctt |
12624141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 12629651 - 12629821
Alignment:
| Q |
18 |
atttattgcattttcaacctcttagtttgatttga----gtcttggaagcaaataggagatttggcatgtacctttttatggcctgaactccttcattga |
113 |
Q |
| |
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|||||||||||||||||| |||||| ||||||||| |||||||||||||||| |||||| || ||||||||||| ||||| |||| | ||||||||| |
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| T |
12629651 |
atttattgcattttcaacgtcttagcttgatttgaatgagtcttggaagcaaataagagattaggaatgtaccttttaatggcatgaattgcttcattga |
12629750 |
T |
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| Q |
114 |
agatcaagatca--------------catatgggcattcctatgacttggttaatgtcttggaggtttata |
170 |
Q |
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|||||| ||||| || |||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
12629751 |
agatcatgatcataaatctgatatatcaaatgggcattcatatgatttggttaatgtcttggaggtttata |
12629821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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