View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16754_low_11 (Length: 495)

Name: NF16754_low_11
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16754_low_11
NF16754_low_11
[»] chr4 (4 HSPs)
chr4 (147-463)||(23668738-23669054)
chr4 (9-107)||(23669086-23669184)
chr4 (181-270)||(5827018-5827107)
chr4 (371-463)||(5827125-5827216)
[»] chr8 (2 HSPs)
chr8 (144-463)||(9369600-9369920)
chr8 (13-105)||(9369943-9370035)
[»] chr7 (7 HSPs)
chr7 (144-463)||(47817657-47817976)
chr7 (9-107)||(47817534-47817632)
chr7 (148-270)||(26049280-26049402)
chr7 (371-463)||(328695-328786)
chr7 (371-463)||(26049171-26049262)
chr7 (144-237)||(328549-328641)
chr7 (382-464)||(32838530-32838611)
[»] chr2 (1 HSPs)
chr2 (371-463)||(10240933-10241026)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 147 - 463
Target Start/End: Complemental strand, 23669054 - 23668738
Alignment:
Q  147 atagcaagctttcaacacttttatgtgcagatttctcaatcatgtagaaaccaatttgttccttcaccactctctattcctatattcaaataattgttta 246  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23669054 atagcaagctttcaacacttttatgtgcatatttctcaatcatgtagaaaccaatttgttccttcaccactctctgttcctatattcaaataattgttta 23668955  T
Q  247 tatgcctcaataaattaatcctcaga-tttgcatgaacttaaaaagaatggtttcaaattttcatatctattgagnnnnnnnnntcagagaaacccttta 345  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||| |||    
T  23668954 tatgtctcaataaattaatcctcagattttgcatgaacttaaaaagaatggtttcaaattttcatatctattgag-aaaaaaattcagagaaacccatta 23668856  T
Q  346 agtaataagattgacactttactaatcattaaagttaaaagaacaaatcgttgatgtatattgaggaataaatcaaacagaattcacacttttcataaac 445  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  23668855 agtaataagattgacactttactaatcattaaaggtaaaagaacaaatcgttgatgtatattaaggaataaatcaaacagaattcacactttttataaac 23668756  T
Q  446 attcaaatgaaaagatta 463  Q
    |||||| |||||||||||    
T  23668755 attcaattgaaaagatta 23668738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 23669184 - 23669086
Alignment:
Q  9 tagattatactataaaccaactacacttgattatttcctttttgtcttattctcccacgactaagcttccaatcctttccctcttcaatctcattcccc 107  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  23669184 tagattatactataaaccaaccacacttgattatttcctttttgtcttattctcccacgaataagcttccaatcatttccctcttcaatctcattcccc 23669086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 5827018 - 5827107
Alignment:
Q  181 ctcaatcatgtagaaaccaatttgttccttcaccactctctattcctatattcaaataattgtttatatgcctcaataaattaatcctca 270  Q
    ||||||||||||||||||||||||||| ||||||| ||| | ||  ||||||||||||||||| |||||| |||||||||||||||||||    
T  5827018 ctcaatcatgtagaaaccaatttgttctttcaccattctgtgttgttatattcaaataattgtctatatgtctcaataaattaatcctca 5827107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 463
Target Start/End: Original strand, 5827125 - 5827216
Alignment:
Q  371 tcattaaagttaaaagaacaaatcgttgatgtatattgaggaataaatcaaacagaattcacacttttcataaacattcaaatgaaaagatta 463  Q
    |||||||||  ||||||||||||| ||||  |||| |||| ||||||||||| || |||| ||| |||||||| |||| |||| |||||||||    
T  5827125 tcattaaaggaaaaagaacaaatctttgacatataatgagcaataaatcaaataggattctcac-tttcataaccattaaaataaaaagatta 5827216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 144 - 463
Target Start/End: Complemental strand, 9369920 - 9369600
Alignment:
Q  144 acaatagcaagctttcaacacttttatgtgcagatttctcaatcatgtagaaaccaatttgttccttcaccactctctattcctatattcaaataattgt 243  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  9369920 acaatagcaagctttcaacacttttatgtgcatatttctcaatcatgtaaaaatcaatttgttccttcaccactctctattcctatatttaaataattgt 9369821  T
Q  244 ttatatgcctcaataaattaatcctcaga-tttgcatgaacttaaaaagaatggtttcaaattttcatatctattgagnnnnnnnnntcagagaaaccct 342  Q
    ||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||         |||||||||||      
T  9369820 ttatatgtctcaataaattaatcctcacattttgcatgaatttaaaaagaatggtttcaaattttcatatctattgagtaaaaaaattcagagaaaccta 9369721  T
Q  343 ttaagtaataagattgacactttactaatcattaaagttaaaagaacaaatcgttgatgtatattgaggaataaatcaaacagaattcacacttttcata 442  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||    
T  9369720 ttaaataataagattgacactttactaatcattaaaggtaaaagaacaaatcattgatgtatattgaggaataaatcaaacatgattcacacttttcata 9369621  T
Q  443 aacattcaaatgaaaagatta 463  Q
    |||||||||||||||||||||    
T  9369620 aacattcaaatgaaaagatta 9369600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 9370035 - 9369943
Alignment:
Q  13 ttatactataaaccaactacacttgattatttcctttttgtcttattctcccacgactaagcttccaatcctttccctcttcaatctcattcc 105  Q
    ||||| |||| |||||  ||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9370035 ttatattatataccaatcacatttgattattacctttttgtcttattctcccacggctaagcttccaatcctttccctcttcaatctcattcc 9369943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 144 - 463
Target Start/End: Original strand, 47817657 - 47817976
Alignment:
Q  144 acaatagcaagctttcaacacttttatgtgcagatttctcaatcatgtagaaaccaatttgttccttcaccactctctattcctatattcaaataattgt 243  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| | |||||||||||||||||||||    
T  47817657 acaatagcaagctttcaacactattatgtgcagatttctcaatcatgtagaaacctatttgttcattcaccactctatgttcctatattcaaataattgt 47817756  T
Q  244 ttatatgcctcaataaattaatcctcaga-tttgcatgaacttaaaaagaatggtttcaaattttcatatctattgagnnnnnnnnntcagagaaaccct 342  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||     
T  47817757 ttatatgtctcaataaattaatcctcaaattttgcatgaacttaaaaagaatggtttcaaattttcatatctattgagaaaataaattcagagaaaccca 47817856  T
Q  343 ttaagtaataagattgacactttactaatcattaaagttaaaagaacaaatcgttgatgtatattgaggaataaatcaaacagaattcacacttttcata 442  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||     
T  47817857 ttaaataataagattgacactttactaatcattaaaggtaaaagaacaaatcgttgatgtatattgaggaataaatgaaacaggattcacacttttcat- 47817955  T
Q  443 aacattcaaatgaaaagatta 463  Q
    |||||||||||||||||||||    
T  47817956 aacattcaaatgaaaagatta 47817976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 47817534 - 47817632
Alignment:
Q  9 tagattatactataaaccaactacacttgattatttcctttttgtcttattctcccacgactaagcttccaatcctttccctcttcaatctcattcccc 107  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47817534 tagatcatactataaaccaaccacacttgattatttcctttttgtcttattctcccacggctaagcttccaatcctttccctcttcaatctcattcccc 47817632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 148 - 270
Target Start/End: Complemental strand, 26049402 - 26049280
Alignment:
Q  148 tagcaagctttcaacacttttatgtgcagatttctcaatcatgtagaaaccaatttgttccttcaccactctctattcctatattcaaataattgtttat 247  Q
    ||||||||| | |||||||||  ||||| |||||||||||||||||||| |||||||||| ||||||| ||| | ||  ||||||||||||| |||  ||    
T  26049402 tagcaagctataaacacttttcggtgcaaatttctcaatcatgtagaaaacaatttgttctttcaccattctgtgttgttatattcaaataactgtccat 26049303  T
Q  248 atgcctcaataaattaatcctca 270  Q
    ||| |||||||||||||||||||    
T  26049302 atgtctcaataaattaatcctca 26049280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 371 - 463
Target Start/End: Original strand, 328695 - 328786
Alignment:
Q  371 tcattaaagttaaaagaacaaatcgttgatgtatattgaggaataaatcaaacagaattcacacttttcataaacattcaaatgaaaagatta 463  Q
    ||||||| | |||||||||||||| ||||  |||| ||||||||||||||||||| |||||||| |||||||| |||| ||||||||||||||    
T  328695 tcattaatggtaaaagaacaaatctttgacatataatgaggaataaatcaaacaggattcacac-tttcataaccattaaaatgaaaagatta 328786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 463
Target Start/End: Complemental strand, 26049262 - 26049171
Alignment:
Q  371 tcattaaagttaaaagaacaaatcgttgatgtatattgaggaataaatcaaacagaattcacacttttcataaacattcaaatgaaaagatta 463  Q
    ||||||||  |||||||||||||| ||||  |||| | || |||||||||||||| |||| ||| |||||||| |||| ||||||||||||||    
T  26049262 tcattaaaagtaaaagaacaaatctttgacatataataagtaataaatcaaacaggattctcac-tttcataaccattaaaatgaaaagatta 26049171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 328549 - 328641
Alignment:
Q  144 acaatagcaagctttcaacacttttatgtgcagatttctcaatcatgtagaaaccaatttgttccttcaccactctctattcctatattcaaat 237  Q
    |||||| |||||| || || |||||  ||||| ||| ||||||||| ||||| ||||||||||||||||||| ||| | ||| |||||||||||    
T  328549 acaatatcaagctatccacgcttttcggtgca-attcctcaatcatatagaatccaatttgttccttcaccattctgtgttcttatattcaaat 328641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 464
Target Start/End: Complemental strand, 32838611 - 32838530
Alignment:
Q  382 aaaagaacaaatcgttgatgtatattgaggaataaatcaaacagaattcacacttttcataaacattcaaatgaaaagattaa 464  Q
    ||||||||||||| ||||  |||| ||||  |||||| |||||| |||| || ||||||||| |||| |||||||||||||||    
T  32838611 aaaagaacaaatctttgacatataatgagagataaattaaacaggattctca-ttttcataatcattaaaatgaaaagattaa 32838530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 371 - 463
Target Start/End: Complemental strand, 10241026 - 10240933
Alignment:
Q  371 tcattaaagttaaaagaacaaatcgttgatgtatattgaggaataaatcaa--acagaattcacacttttcataaacattcaaatgaaaagatta 463  Q
    ||||||||| |||||||||||||| ||||| ||||  ||||||| ||||||  || | |||||||| |||||||  |||||||||||||||||||    
T  10241026 tcattaaaggtaaaagaacaaatcattgatatataacgaggaatgaatcaaccacgggattcacac-tttcatatccattcaaatgaaaagatta 10240933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University