View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16754_low_14 (Length: 478)

Name: NF16754_low_14
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16754_low_14
NF16754_low_14
[»] chr7 (3 HSPs)
chr7 (7-412)||(39741956-39742364)
chr7 (7-122)||(48850726-48850840)
chr7 (7-77)||(20077342-20077412)
[»] chr4 (7 HSPs)
chr4 (6-412)||(6898414-6898823)
chr4 (7-76)||(12094856-12094925)
chr4 (10-77)||(9451245-9451312)
chr4 (7-77)||(24257703-24257773)
chr4 (24-122)||(7810064-7810162)
chr4 (6-72)||(4883589-4883655)
chr4 (7-73)||(27067874-27067940)
[»] chr3 (11 HSPs)
chr3 (6-122)||(15291460-15291575)
chr3 (7-77)||(1529165-1529236)
chr3 (6-77)||(52041384-52041455)
chr3 (5-77)||(1141742-1141814)
chr3 (6-77)||(39484808-39484880)
chr3 (7-77)||(22424370-22424440)
chr3 (30-76)||(37605421-37605468)
chr3 (6-73)||(42655772-42655839)
chr3 (46-122)||(48909790-48909865)
chr3 (6-78)||(15996379-15996450)
chr3 (7-122)||(49235433-49235547)
[»] chr5 (6 HSPs)
chr5 (225-428)||(33619422-33619630)
chr5 (8-122)||(22780015-22780128)
chr5 (7-76)||(37337323-37337393)
chr5 (6-76)||(26110687-26110758)
chr5 (6-76)||(11300764-11300835)
chr5 (7-73)||(31981793-31981859)
[»] chr8 (6 HSPs)
chr8 (6-76)||(42315341-42315412)
chr8 (6-76)||(45244285-45244356)
chr8 (7-76)||(23828343-23828413)
chr8 (7-78)||(3193173-3193244)
chr8 (4-77)||(26981032-26981105)
chr8 (6-40)||(7496757-7496791)
[»] chr6 (10 HSPs)
chr6 (6-76)||(31665629-31665700)
chr6 (9-76)||(15296147-15296215)
chr6 (7-122)||(26840415-26840529)
chr6 (6-77)||(31442516-31442587)
chr6 (7-77)||(826732-826802)
chr6 (5-122)||(26839987-26840103)
chr6 (7-77)||(21762022-21762092)
chr6 (10-77)||(30836481-30836548)
chr6 (7-81)||(7867944-7868018)
chr6 (7-77)||(20915997-20916067)
[»] chr2 (11 HSPs)
chr2 (6-122)||(6667462-6667577)
chr2 (6-77)||(32281485-32281556)
chr2 (6-76)||(28926074-28926144)
chr2 (6-122)||(28922372-28922486)
chr2 (7-77)||(38996520-38996590)
chr2 (10-93)||(21922337-21922420)
chr2 (6-77)||(22625387-22625458)
chr2 (7-81)||(28125536-28125610)
chr2 (6-74)||(29280084-29280152)
chr2 (7-77)||(38955840-38955910)
chr2 (23-122)||(14456264-14456362)
[»] chr1 (6 HSPs)
chr1 (7-77)||(15700721-15700791)
chr1 (3-76)||(46555498-46555572)
chr1 (7-77)||(22964007-22964077)
chr1 (18-73)||(3908833-3908888)
chr1 (7-53)||(24819183-24819229)
chr1 (6-53)||(44508600-44508647)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 412
Target Start/End: Complemental strand, 39742364 - 39741956
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtgtt 106  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||| | |||||||||||||||| |||  ||     
T  39742364 atctttcttactaaagcttgtttgatcaagctattgataaccctaatcttaacctaatattttccctcgattatgttagcattaactccttctaatcgt- 39742266  T
Q  107 aattctaatcaacattggaaacaaaaatgtatatacataggagaacaaaaattgctagataccaatgttatttatgacttttgtctgccagcttaatttt 206  Q
          ||| | |||||||||||||||||||||  ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  39742265 ------aataagcattggaaacaaaaatgtata--cataggagaacaaaaattgctggataccaacgttatttatgacttttgtctgccaacttaatttt 39742174  T
Q  207 accaattttcaatgttcc------------taccgacgcctcaagtttcttcagagttaagattaagctttctctttctctcatttcccctcccatcacc 294  Q
    ||||||||||||||||||            ||||| || ||||||||||||||||||| || |||| ||| |||||||||||||||||||| ||||||||    
T  39742173 accaattttcaatgttccccttgatggttgtaccgccggctcaagtttcttcagagttcagcttaaacttcctctttctctcatttccccttccatcacc 39742074  T
Q  295 tcctttcaatatcatatctcattggaaacctaatctcttttgcacatcaatttcattcacccaagttgttaaaaccgtcatcggctcctcttccggcatc 394  Q
    || |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| |||| |||||||||||    
T  39742073 tcatttcaatatcatatctcattggaaacctaatctcctttgcacaacaatttcattcacccaagttgttaaaaccctcatcgcctccccttccggcatc 39741974  T
Q  395 atcatttgaagaacaccg 412  Q
    ||||| |||||| |||||    
T  39741973 atcatctgaagaccaccg 39741956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 48850726 - 48850840
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtgtt 106  Q
    ||||||||| ||||||||||| || ||||||||||  | ||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||||| |    
T  48850726 atctttctttctaaagcttgtctgatcaagctattgtttaccctaatcttaacctaat-ttttccctccattatgttagcattaactccttctaagtgct 48850824  T
Q  107 aattctaatcaacatt 122  Q
    ||| ||||||| ||||    
T  48850825 aatcctaatcagcatt 48850840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 20077412 - 20077342
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 77  Q
    ||||||||||||||||||||||||||||||| ||     |||||||| |||||||||||||||||||||||    
T  20077412 atctttcttactaaagcttgtttggtcaagcaatatcataccctaattttaacctaatattttccctccat 20077342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 412
Target Start/End: Complemental strand, 6898823 - 6898414
Alignment:
Q  6 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtgt 105  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    |||     
T  6898823 tatctttcttactaaagcttgtttgatcaagctattggtaaccctaatcttaacctaatattttccgtccattgtgttagcattaactcctt----gtg- 6898729  T
Q  106 taattctaatcaacattggaaacaaaaatgtatatacataggagaacaaaaattgctagataccaatgttatttatgacttttgtctgccagcttaattt 205  Q
      ||  |||| | |||||||||||||||||||||  ||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| | ||||||    
T  6898728 --atcgtaataagcattggaaacaaaaatgtata--catgggagaacaaaaattgctggataccaacgttatttatgacttttgtctgccaacctaattt 6898633  T
Q  206 taccaattttcaatgttcc------------taccgacgcctcaagtttcttcagagttaagattaagctttctctttctctcatttcccctcccatcac 293  Q
    |||||||||||||||||||            ||||| || ||||||||||||||||||| || |||| ||| |||||||||||||||||||| |||||||    
T  6898632 taccaattttcaatgttccccttgatggttgtaccgccggctcaagtttcttcagagttcagcttaaacttcctctttctctcatttccccttccatcac 6898533  T
Q  294 ctcctttcaatatcatatctcattggaaacctaatctcttttgcacatcaatttcattcacccaagttgttaaaaccgtcatcggctcctcttccggcat 393  Q
    ||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| ||||||||||    
T  6898532 ctcatttcaatatcatatctcattgaaaacctaatctcttttgcacaacaatttcattcacccaagttgttaaaaccctcatcgcctccccttccggcat 6898433  T
Q  394 catcatttgaagaacaccg 412  Q
    |||||| |||||| |||||    
T  6898432 catcatctgaagaccaccg 6898414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 12094925 - 12094856
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctcca 76  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  12094925 atctttcttactaaagcttgtttggtcaagctattagaaaccctaattttaacctaatattttccctcca 12094856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 9451245 - 9451312
Alignment:
Q  10 tttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 77  Q
    |||||||||||||||||| |||||||||||||  | |||||||| |||||||||||||||||||||||    
T  9451245 tttcttactaaagcttgtctggtcaagctattgttcaccctaattttaacctaatattttccctccat 9451312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 24257703 - 24257773
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 77  Q
    ||||||||||||||||||||||||||||||| |||  | |||||||| ||||||||||||||| |||||||    
T  24257703 atctttcttactaaagcttgtttggtcaagcaattgttcaccctaattttaacctaatatttttcctccat 24257773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 7810064 - 7810162
Alignment:
Q  24 ttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactcct--tttaagtgttaattctaatcaacat 121  Q
    ||||||||||||||||||  | ||||||||||||||||||| ||||||||||||||| || | ||||||||||  | |||||| |||| |||||||||||    
T  7810064 ttgtttggtcaagctattgtttaccctaatcttaacctaat-ttttccctccattgt-ttcggattaactccttctataagtgctaatcctaatcaacat 7810161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 4883655 - 4883589
Alignment:
Q  6 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccc 72  Q
    |||||| |||||||||||||||| ||||||||||||  |||||||||   |||||||| ||||||||    
T  4883655 tatcttacttactaaagcttgttaggtcaagctattcctaaccctaaaactaacctaacattttccc 4883589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 27067874 - 27067940
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccct 73  Q
    ||||||||||||||||||||||||||||| ||||     |||||||| |||| ||||||||||||||    
T  27067874 atctttcttactaaagcttgtttggtcaaactatcctataccctaattttaatctaatattttccct 27067940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 15291460 - 15291575
Alignment:
Q  6 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtgt 105  Q
    ||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||     
T  15291460 tatctttcttactaaagcttgtttggtcaagctattgtttaccctaatcttaacctaat-ttttccctccattgtattagcattaactccttctaagtgc 15291558  T
Q  106 taattctaatcaacatt 122  Q
    |||| ||||||||||||    
T  15291559 taatcctaatcaacatt 15291575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 1529165 - 1529236
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctccat 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  1529165 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaattttttccctccat 1529236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 52041455 - 52041384
Alignment:
Q  6 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 77  Q
    |||||||||||||||||||||| |||||||||||||  | |||||||| ||||||||||||||||| |||||    
T  52041455 tatctttcttactaaagcttgtctggtcaagctattgttcaccctaattttaacctaatattttccttccat 52041384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 1141742 - 1141814
Alignment:
Q  5 gtatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 77  Q
    ||||||||||||||||||||||||||||||||| |||  | || ||||| |||| ||||||||||||||||||    
T  1141742 gtatctttcttactaaagcttgtttggtcaagcaattgttcactctaattttaatctaatattttccctccat 1141814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 39484880 - 39484808
Alignment:
Q  6 tatctttcttactaaagcttgtttggtcaagctat-tagtaaccctaatcttaacctaatattttccctccat 77  Q
    ||||||||||||||||||||||||||||||||||| |  | |||||| | |||||||||||||||||||||||    
T  39484880 tatctttcttactaaagcttgtttggtcaagctatatgttcaccctagttttaacctaatattttccctccat 39484808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 22424440 - 22424370
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 77  Q
    |||||||||||||||| || | |||||||||||||  | |||||||| |||||||||||||||||||||||    
T  22424440 atctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccat 22424370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 37605468 - 37605421
Alignment:
Q  30 ggtcaagctattagtaaccctaat-cttaacctaatattttccctcca 76  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  37605468 ggtcaagctattagtaaccctaattcttaacctaatattttccctcca 37605421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 42655772 - 42655839
Alignment:
Q  6 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccct 73  Q
    |||||||||||| ||||||||| |||||||||||||  | |||||||| ||||| |||||||||||||    
T  42655772 tatctttcttaccaaagcttgtctggtcaagctattgttcaccctaattttaacataatattttccct 42655839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 48909865 - 48909790
Alignment:
Q  46 accctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtgttaattctaatcaacatt 122  Q
    ||||||||||||||||||| |||||||| |||||||||||  |||||||||| ||| || |||| ||||||| ||||    
T  48909865 accctaatcttaacctaat-ttttcccttcattgtattagtgttaactccttctaaatgctaatcctaatcagcatt 48909790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 15996450 - 15996379
Alignment:
Q  6 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccatt 78  Q
    |||||||||||||||||||||| || ||||||||||  | ||||||||  ||||||||| |||||||| ||||    
T  15996450 tatctttcttactaaagcttgtctgatcaagctattgtttaccctaattctaacctaat-ttttccctgcatt 15996379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 49235547 - 49235433
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtgtt 106  Q
    |||||||||||||||| ||||||||||||||||| | | |||||||| | ||| | |  |||| ||||||||||  || |||||| || ||||||||| |    
T  49235547 atctttcttactaaagtttgtttggtcaagctatcatttaccctaat-tcaacattaattttttcctccattgtgataacattaaatctttttaagtggt 49235449  T
Q  107 aattctaatcaacatt 122  Q
    | | ||||||| ||||    
T  49235448 attcctaatcagcatt 49235433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 225 - 428
Target Start/End: Complemental strand, 33619630 - 33619422
Alignment:
Q  225 taccgacgcctcaagtttcttcagagttaagattaagctttctctttctctcatttcccctcccatcacctcctttcaatatcatatctcattggaaacc 324  Q
    |||||| | |||| ||||||||||| ||||| ||   ||||||| |||||||||||||||||  ||||||||||||||||||||| ||||| | ||||||    
T  33619630 taccgatggctcatgtttcttcaga-ttaagctttctctttctccttctctcatttcccctc--atcacctcctttcaatatcatttctcaatagaaacc 33619534  T
Q  325 taatctctttt--------gcacatcaatttcattcacccaagttgttaaaaccgtcatcggctcctcttccggcatcatcatttgaagaacaccgtcga 416  Q
    |||||||| |         ||||| ||||||||||||||||||||||||||||| |||||| |||| | |||||||||||||| | |||| |||| ||||    
T  33619533 taatctctataacgagtaagcacaacaatttcattcacccaagttgttaaaaccctcatcgcctccccctccggcatcatcatctaaagaccaccttcga 33619434  T
Q  417 aggaggtatgca 428  Q
     |||||||||||    
T  33619433 tggaggtatgca 33619422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 22780128 - 22780015
Alignment:
Q  8 tctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtgtta 107  Q
    |||||||| ||||||||||| || ||||||||||  | ||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||| ||    
T  22780128 tctttctttctaaagcttgtctgatcaagctattgtttaccctaatcttaacctaat-ttttccctccattgtgttagcattaactccttctaagtgcta 22780030  T
Q  108 attctaatcaacatt 122  Q
    ||  |||||| ||||    
T  22780029 atcataatcagcatt 22780015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 37337323 - 37337393
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctcca 76  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||    
T  37337323 atctttcttactaaagcttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctcca 37337393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 26110687 - 26110758
Alignment:
Q  6 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctcca 76  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||| | ||||||||||||||||||||||    
T  26110687 tatctttcttactaaaacttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctcca 26110758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 11300835 - 11300764
Alignment:
Q  6 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctcca 76  Q
    |||||||||||||||| ||||| |||| ||||||| ||||||||||| | ||||||||||||||||||||||    
T  11300835 tatctttcttactaaaacttgtctggtgaagctataagtaaccctaatttttaacctaatattttccctcca 11300764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 31981793 - 31981859
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccct 73  Q
    |||||| ||||||||||||||||| |||||| |||  | | |||||| |||||||||||||||||||    
T  31981793 atcttttttactaaagcttgtttgatcaagcaattgttcaacctaattttaacctaatattttccct 31981859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 42315341 - 42315412
Alignment:
Q  6 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctcca 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42315341 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcca 42315412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 45244356 - 45244285
Alignment:
Q  6 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctcca 76  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45244356 tatctttcttactaaagtttgtctggtcaagctattagtaaccctaattcttaacctaatattttccctcca 45244285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 23828343 - 23828413
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctcca 76  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  23828343 atctttcttactagagcttgtttggtcaagctattagtaaccctaatttttaacctaatattttccctcca 23828413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 3193244 - 3193173
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccatt 78  Q
    ||||||||||||||||||||| ||||||||  |||| | | | |||| ||||||||||||||||||||||||    
T  3193244 atctttcttactaaagcttgtctggtcaagtaattattcatcttaattttaacctaatattttccctccatt 3193173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 26981032 - 26981105
Alignment:
Q  4 agtatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 77  Q
    ||||||||||||||||||||||||||| |||||| ||     |||||||| ||||||||||||||| |||||||    
T  26981032 agtatctttcttactaaagcttgtttgatcaagcaatatcataccctaattttaacctaatatttttcctccat 26981105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 7496757 - 7496791
Alignment:
Q  6 tatctttcttactaaagcttgtttggtcaagctat 40  Q
    ||||||||||||||||||||||||| |||||||||    
T  7496757 tatctttcttactaaagcttgtttgatcaagctat 7496791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 9e-28; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 31665700 - 31665629
Alignment:
Q  6 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctcca 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31665700 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcca 31665629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 15296147 - 15296215
Alignment:
Q  9 ctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctcca 76  Q
    ||||||||||||||||||||| |||||||||| ||||||||||| | ||||||||||||||||||||||    
T  15296147 ctttcttactaaagcttgttttgtcaagctataagtaaccctaatttttaacctaatattttccctcca 15296215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 26840415 - 26840529
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtgtt 106  Q
    ||||||||| ||||||||||||||||||||| || | ||||||||||||||||||| | ||||||||||    | ||| |||||||||||| |||||||     
T  26840415 atctttctttctaaagcttgtttggtcaagccatcattaaccctaatcttaacctact-ttttccctcccaaatcttaacattaactccttctaagtgta 26840513  T
Q  107 aattctaatcaacatt 122  Q
    | | ||||||||||||    
T  26840514 attcctaatcaacatt 26840529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 31442516 - 31442587
Alignment:
Q  6 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 77  Q
    |||||||||||||||||||||||||||||||| || |   |||||||| |||||||||||||||||||||||    
T  31442516 tatctttcttactaaagcttgtttggtcaagcaatcacataccctaattttaacctaatattttccctccat 31442587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 826802 - 826732
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 77  Q
    ||||||||||||||| ||||| |||||||||||||  | ||| |||| |||||||||||||||||||||||    
T  826802 atctttcttactaaaacttgtctggtcaagctattgttcaccttaattttaacctaatattttccctccat 826732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 26839987 - 26840103
Alignment:
Q  5 gtatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtg 104  Q
    ||||||||||| |||||| ||||||| |||||| || | ||||||||||||||||||| | ||||||||||    | ||| |||||||||||| ||||||    
T  26839987 gtatctttctttctaaagtttgtttgatcaagccatcattaaccctaatcttaacctact-ttttccctcccaaatcttaacattaactccttctaagtg 26840085  T
Q  105 ttaattctaatcaacatt 122  Q
    | | | ||||||||||||    
T  26840086 taattcctaatcaacatt 26840103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 21762022 - 21762092
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 77  Q
    ||||||||||||||| ||||| || ||||||||||  | |||||||| |||||||| ||||||||||||||    
T  21762022 atctttcttactaaaacttgtctgatcaagctattgctcaccctaattttaacctactattttccctccat 21762092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 30836548 - 30836481
Alignment:
Q  10 tttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 77  Q
    |||||||||||||||||| || |||||| |||  | |||||||| |||| ||||||||||||||||||    
T  30836548 tttcttactaaagcttgtctgatcaagcaattgttcaccctaattttaatctaatattttccctccat 30836481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 7868018 - 7867944
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgta 81  Q
    ||||||||||||||||||| | ||||||||||||     |||||||| | | |||||||||||||||||||||||    
T  7868018 atctttcttactaaagcttatctggtcaagctatctcataccctaatttaaccctaatattttccctccattgta 7867944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 20916067 - 20915997
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 77  Q
    ||||||||||||||||||||| || |||||| ||  |  ||| |||| |||||||||||||||||||||||    
T  20916067 atctttcttactaaagcttgtctgatcaagcaatatgataccttaattttaacctaatattttccctccat 20915997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 6667462 - 6667577
Alignment:
Q  6 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtgt 105  Q
    |||||||||| |||||||||||||||||||||||||  | ||||||||| ||||||||| |||||||||||||| |||||||||||||| || ||| ||     
T  6667462 tatctttctttctaaagcttgtttggtcaagctattgtttaccctaatcctaacctaat-ttttccctccattgcattagcattaactctttctaaatgc 6667560  T
Q  106 taattctaatcaacatt 122  Q
    |||| ||||||| ||||    
T  6667561 taatcctaatcagcatt 6667577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 32281485 - 32281556
Alignment:
Q  6 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 77  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  32281485 tatctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaacctagtattttccctccat 32281556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 28926074 - 28926144
Alignment:
Q  6 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctcca 76  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||    
T  28926074 tatctttcttactaaagcttgtctggtcaagctattagtaaccctaattcttaacctaat-ttttccctcca 28926144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 6 - 122
Target Start/End: Complemental strand, 28922486 - 28922372
Alignment:
Q  6 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaactccttttaagtgt 105  Q
    |||||| ||||||||||| ||| |||||||||||||  | ||||||||||||||||||| |||||| |||||||| |||||||||| || || ||||||     
T  28922486 tatcttacttactaaagcatgtctggtcaagctattgtttaccctaatcttaacctaat-ttttccatccattgtgttagcattaa-tcattctaagtgg 28922389  T
Q  106 taattctaatcaacatt 122  Q
    |||| ||||||| ||||    
T  28922388 taatcctaatcagcatt 28922372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 38996590 - 38996520
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 77  Q
    ||||||||||||||||||||| || |||||||||  || |||||||| |||||||||||||||||||||||    
T  38996590 atctttcttactaaagcttgtctgatcaagctatatgttaccctaattttaacctaatattttccctccat 38996520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 21922337 - 21922420
Alignment:
Q  10 tttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgtattagcattaact 93  Q
    |||||| ||||||||||| || ||||||||| | | |||||||||||||||||||||||||||||| |  | ||||||||||||    
T  21922337 tttctttctaaagcttgtctgatcaagctataacttaccctaatcttaacctaatattttccctccttaatcttagcattaact 21922420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 22625458 - 22625387
Alignment:
Q  6 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 77  Q
    |||||||||||||||| ||||| ||||||||| ||| |  |||||||| |||||||||||||||||||||||    
T  22625458 tatctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccat 22625387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 28125536 - 28125610
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccattgta 81  Q
    ||||||||||||||||||||| ||||||||||||     |||||||| | | |||||||||||||||||||||||    
T  28125536 atctttcttactaaagcttgtctggtcaagctatctcataccctaatttaaccctaatattttccctccattgta 28125610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 29280084 - 29280152
Alignment:
Q  6 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctc 74  Q
    |||||||||||||||| ||||| || | ||||||||  | |||||||| ||||||||||||||||||||    
T  29280084 tatctttcttactaaaacttgtctgatgaagctattgttcaccctaattttaacctaatattttccctc 29280152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 38955910 - 38955840
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 77  Q
    ||||| ||||||||||||| | || |||| |||||  ||||||||||  ||||||||||||||||||||||    
T  38955910 atcttacttactaaagcttatctgatcaaactattgataaccctaattctaacctaatattttccctccat 38955840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 14456362 - 14456264
Alignment:
Q  23 cttgtttggtcaagctattagtaaccctaatcttaac-ctaatattttccctccattgtattagcattaactccttttaagtgttaattctaatcaacat 121  Q
    |||||||||||||||||| | | |||||||| | ||| ||||| |||||||||||||||  ||||||||| ||||| |||||| || | |||||||||||    
T  14456362 cttgtttggtcaagctatcatttaccctaat-tcaactctaat-ttttccctccattgtgatagcattaaatccttctaagtggtattcctaatcaacat 14456265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 15700721 - 15700791
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 77  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  15700721 atctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaacctagtattttccctccat 15700791  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 46555498 - 46555572
Alignment:
Q  3 gagtatctttcttactaaagcttgtttggtcaagctattagtaaccctaa-tcttaacctaatattttccctcca 76  Q
    |||||||||| ||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46555498 gagtatctttattactaaagcttgtccggtcaagctattagtaaccctaattcttaacctaatattttccctcca 46555572  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 22964007 - 22964077
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccctccat 77  Q
    ||||| ||||||||||||||| ||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  22964007 atcttacttactaaagcttgtctggtcaagctattggtaaccctaattctaacctaatattttccctccat 22964077  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 3908888 - 3908833
Alignment:
Q  18 taaagcttgtttggtcaagctattagtaaccctaatcttaacctaatattttccct 73  Q
    |||||||||| || |||||||||| ||||||||||| |||||||| ||||||||||    
T  3908888 taaagcttgtctgatcaagctattggtaaccctaattttaacctactattttccct 3908833  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 24819183 - 24819229
Alignment:
Q  7 atctttcttactaaagcttgtttggtcaagctattagtaaccctaat 53  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||||||    
T  24819183 atcttacttaccaaagcttgtttggtcaagctattactaaccctaat 24819229  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 44508600 - 44508647
Alignment:
Q  6 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaat 53  Q
    |||||||||| ||||||||||| || ||||||||||| ||||||||||    
T  44508600 tatctttctttctaaagcttgtctgatcaagctattactaaccctaat 44508647  T

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