View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_low_16 (Length: 445)
Name: NF16754_low_16
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 17 - 435
Target Start/End: Original strand, 55370859 - 55371277
Alignment:
| Q |
17 |
actcatttacttattctccattctcacaaaatctcaatccaccctttgtagaacttcatgtggttccattccaatccaatatcctttttccattgatgat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55370859 |
actcatttacttattctccattctcacaaaatctcaatccaccctttgtagaacttcatgtggttccattccaatccaatatcctttttccattgatgat |
55370958 |
T |
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| Q |
117 |
ggctgtggaagtccatattacagattcattctttcttgttctgatacacaaaagcttgaactaagaacaccttctggtagataccctattcataatgtta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55370959 |
ggctgtggaagtccatattacagattcattctttcttgttctgatacacaaaagcttgaactaagaacaccttctggtagataccctattcataatgtta |
55371058 |
T |
|
| Q |
217 |
gctatattgatccacacattgtagtcactgatccattcatgtggaactgtgaagacggtgccaattatcgaccaacaagaccatttagtttagacacaag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
55371059 |
gctatattgatccacacattgtagtcactgatccattcatgtggaactgtgaagacggtgtcaattatcgaccaacaagaccatttagtttagacacaag |
55371158 |
T |
|
| Q |
317 |
cacacgtttcaagctttcgtctcaaaatcagtatattttcttcaattgtagtgaagaaaaagttatcgttaaaccaaagcctgtgttttgtgaacaattt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
55371159 |
cacacgtttcaagctttcgtctcaaaatcagtatattttcttcaattgtagtgaagaaaaagttattgtaaaaccaaagcctgtgttttgtgaacaattt |
55371258 |
T |
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| Q |
417 |
cctgaacactgtgattcat |
435 |
Q |
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| T |
55371259 |
cctgaacactgtgattcat |
55371277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 42 - 435
Target Start/End: Original strand, 8514890 - 8515286
Alignment:
| Q |
42 |
acaaaatctcaatccaccctttgtagaacttcatgtggttccattccaatccaatatcctttttccattgatgatggctgtggaagtccatattacagat |
141 |
Q |
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|||||||||||||| | | | || |||||||| |||| | |||| ||||| ||||||| ||| |||||||||||| |||||||||||||| || ||| |
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| T |
8514890 |
acaaaatctcaatcaagcatatgcagaacttcttgtgctaacatttcaatcaaatatccatttagcattgatgatggatgtggaagtccatactatagac |
8514989 |
T |
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| Q |
142 |
tcattctttcttgttctgatacacaaaag---cttgaactaagaacaccttctggtagataccctattcataatgttagctatattgatccacacattgt |
238 |
Q |
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|||||| |||||||| || || |||| || ||||| |||||||||| ||| |||| ||| ||| | |||||| ||||| |||||||| |
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| T |
8514990 |
acattctctcttgttccgactcagaaaaaaaactcgaactccgaacaccttccggtcgatatgaagttcgtaacataagctatgccgatcctcacattgt |
8515089 |
T |
|
| Q |
239 |
agtcactgatccattcatgtggaactgtgaagacggtgccaattatcgaccaacaagaccatttagtttagacacaagcacacgtttcaagctttcgtct |
338 |
Q |
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||||||||||||||||||||||| |||||||| || | |||| |||||||||| ||||||||||||||||||| |||||| || ||||| || | |
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| T |
8515090 |
tgtcactgatccattcatgtggaaatgtgaagatggggaaaattttcgaccaacacgaccatttagtttagacactagcacaaaattgaagctctctaca |
8515189 |
T |
|
| Q |
339 |
caaaatcagtatattttcttcaattgtagtgaagaaaaagttatcgttaaaccaaagcctgtgttttgtgaacaatttcctgaacactgtgattcat |
435 |
Q |
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|||||| |||| || || ||||||||||||||| || | || || || ||||||||||| ||||||||||||| ||||||||||| |||||||||| |
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| T |
8515190 |
caaaatgagtacatgtttttcaattgtagtgaaaaacatgtgattattcaaccaaagcctatgttttgtgaacattttcctgaacattgtgattcat |
8515286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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