View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_low_18 (Length: 440)
Name: NF16754_low_18
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 42 - 424
Target Start/End: Original strand, 52402628 - 52403010
Alignment:
| Q |
42 |
gaggtttcaataaattttcttccttattatggctaattggattaatgaaaaagaatgagatggagcttaatagtgaaacaaagtctaatttcattcgttt |
141 |
Q |
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| T |
52402628 |
gaggtttcaataaattttcttccttattatggctaattggattaatgaaaaagaatgagatggagcttaatagtgagacaaagtctaatttcattcgttt |
52402727 |
T |
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| Q |
142 |
gtgagaaatgatctataacttatttgcaattatattggccctatcaataataagattgtaagattttttgcatagaatgggttagacacactggaaaaca |
241 |
Q |
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| T |
52402728 |
gtgagaaatgatctataacttctttgcaattatattggccctatcaataataagattgtaagattttttgcatagaatgggttagacacaccggaaaaca |
52402827 |
T |
|
| Q |
242 |
agccttatctacctttaaatccgttagaaattgatactgaacatagaaatataaaagaaacaactcatctgattaattaagaaatcacagccagcgacac |
341 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52402828 |
agccttatctacctttaaatccgttagaaattgataccgaacatagaaatataaaagaaacaactcatctgattaattaagaaatcacagccagtcacac |
52402927 |
T |
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| Q |
342 |
tgaaataagaaaaatatcacgggtgataccaaacaaagttcaacacatgaccaagaaataaaatcatcctcgattaaacctat |
424 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52402928 |
tgaaataaaaaaaatatcacggttgataccaaacaaagttcaacacatgaccaagaaataaaatcatcctcgattaaacctat |
52403010 |
T |
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