View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_low_19 (Length: 417)
Name: NF16754_low_19
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 310
Target Start/End: Original strand, 3946288 - 3946584
Alignment:
| Q |
14 |
gagatgaacctgtgtccattgattagtggttggagggatgacaagcattttctcatagttagataacatttttgctcaccaaaagagaatccttcaagag |
113 |
Q |
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| T |
3946288 |
gagatgaacctgtgtccattgattagtggttggagggatgacaagcattttctcatagttagataacatttttgctcaccaaaagagaatccttcaagag |
3946387 |
T |
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| Q |
114 |
tatacagacaacaaagagcagttggttactagcttcaagggtttcaaatataagagagttaggggtaagaaattcaagccaaagatcggttatagcatga |
213 |
Q |
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| T |
3946388 |
tatacagacaacaaagagcagttggttactagcttcaagggtttcaaatataagagagttaggggtaagaaattcaagccgaagatcggttatagcatga |
3946487 |
T |
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| Q |
214 |
tcaacataaattattatatcttatattttatattagtctcgtgttgaccggtgtcctcgcagaagtaaaagatagaaatattttatttaaaacaata |
310 |
Q |
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| T |
3946488 |
tcaacataaattattatattttatattttatattagcctcgtgttgaccggtgtcctcgcataattaaaagatagaaatattttattgaaaacaata |
3946584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 365
Target Start/End: Original strand, 3946612 - 3946642
Alignment:
| Q |
335 |
gaccttattacatttaatgaatccataaata |
365 |
Q |
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| T |
3946612 |
gaccttattacatttaatgaatccataaata |
3946642 |
T |
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