View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16754_low_2 (Length: 614)

Name: NF16754_low_2
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16754_low_2
NF16754_low_2
[»] chr1 (6 HSPs)
chr1 (16-292)||(15885018-15885294)
chr1 (68-292)||(12637754-12637978)
chr1 (33-286)||(12610760-12611013)
chr1 (318-451)||(15885317-15885450)
chr1 (330-423)||(12637632-12637725)
chr1 (322-430)||(12610619-12610727)
[»] scaffold0059 (1 HSPs)
scaffold0059 (19-285)||(62894-63160)
[»] scaffold0554 (1 HSPs)
scaffold0554 (132-276)||(5626-5770)
[»] chr3 (5 HSPs)
chr3 (133-294)||(23146647-23146811)
chr3 (160-294)||(23039772-23039909)
chr3 (160-294)||(23036895-23037032)
chr3 (132-216)||(23033659-23033743)
chr3 (193-289)||(23141003-23141099)
[»] chr6 (1 HSPs)
chr6 (160-278)||(21780681-21780799)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 15885018 - 15885294
Alignment:
Q  16 ccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaagaagagttcgcgtggtt 115  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||  ||    
T  15885018 ccatcaacctcactgaacttgtagtttcatcgacatttgctatcctttcaagggctgcatttggaaacaaatgcaaagaccaagaagagttcgcgtcttt 15885117  T
Q  116 ggggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgag 215  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||    
T  15885118 ggggaagggagaatcaattgctggaggttttgacataggtgaactgtttccttcatctaaatggattcaacttgtttccggtttgaggcctaaacttgag 15885217  T
Q  216 aggttgcatagacgaattgatcatatactggaaaatatcatcattgaacataaagaagcaaagtcaaaagccaaaga 292  Q
    |||||||||||||| |||||||  ||||| ||||| |||||||||||||||||||||||||| |||||||| |||||    
T  15885218 aggttgcatagacgtattgatcgaatactagaaaacatcatcattgaacataaagaagcaaattcaaaagcaaaaga 15885294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 68 - 292
Target Start/End: Complemental strand, 12637978 - 12637754
Alignment:
Q  68 ggctgcgtttggaaacaaatgcaaagaccaagaagagttcgcgtggttggggaagggagaatcaattgcaggaggttttgacattggtgaactgtttcct 167  Q
    |||||||||||||||||||||||||| ||||||| || |||  | |||||  || ||||||||| ||| ||||||||||||||| |||||| ||||||||    
T  12637978 ggctgcgtttggaaacaaatgcaaaggccaagaacagctcgtatcgttggcaaatggagaatcagttggaggaggttttgacataggtgaattgtttcct 12637879  T
Q  168 tcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcattgaacata 267  Q
    |||||||||||||||||||| ||||||||||| ||| ||||| |||||   |||||||||| |||||||| |||| | | ||| ||||||| ||||||||    
T  12637878 tcagctaaatggcttcaactagtttctggtttcaggtctaaaattgaggtattgcatagacaaattgatcttatattagtaaacatcatcaatgaacata 12637779  T
Q  268 aagaagcaaagtcaaaagccaaaga 292  Q
    ||||||| ||||||||||| |||||    
T  12637778 aagaagctaagtcaaaagcaaaaga 12637754  T

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Target: chr1; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 33 - 286
Target Start/End: Complemental strand, 12611013 - 12610760
Alignment:
Q  33 cttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaagaagagttcgcgtggttggggaagggagaatcaa 132  Q
    ||||||||||||||||| ||| ||||| || | |||||||||||||| | |||| |||||| |  ||||||||| |  |   | ||  | ||||||||||    
T  12611013 cttgtagtttcatcaacattttctatcattacaaaggctgcgtttggcagcaaaggcaaaggcagagaagagtttggatctattggagatggagaatcaa 12610914  T
Q  133 ttgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaat 232  Q
    ||||||||||||||||||| | |||| | ||||||||||| ||||||||||||| |||||| ||||||||||||||||| |||||||||||||| | |||    
T  12610913 ttgcaggaggttttgacatagctgaattatttccttcagcgaaatggcttcaacgtgtttccggtttgaggcctaaactggagaggttgcataggcaaat 12610814  T
Q  233 tgatcatatactggaaaatatcatcattgaacataaagaagcaaagtcaaaagc 286  Q
    |||||| ||||| ||||| ||  ||| |||||||||||||||||||||||||||    
T  12610813 tgatcaaatactagaaaacattgtcactgaacataaagaagcaaagtcaaaagc 12610760  T

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Target: chr1; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 318 - 451
Target Start/End: Original strand, 15885317 - 15885450
Alignment:
Q  318 gatttggttgacgttcttctaaaattccaaggtggaaatgataatgacaaagatatatgcttaactgacaacaacatcaaggctgtaatcctggtaagta 417  Q
    ||||||||||||||||||||||||| |||| || | ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| |    
T  15885317 gatttggttgacgttcttctaaaataccaacgtcgcaatgataatgaaaaagatatatgcttaactgacaacaacatcaaggctgtactcctagtaagga 15885416  T
Q  418 taataaaacccttcaagtataatttagatgaatg 451  Q
    ||||||| ||||| ||||||||||||||||||||    
T  15885417 taataaaccccttgaagtataatttagatgaatg 15885450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 330 - 423
Target Start/End: Complemental strand, 12637725 - 12637632
Alignment:
Q  330 gttcttctaaaattccaaggtggaaatgataatgacaaagatatatgcttaactgacaacaacatcaaggctgtaatcctggtaagtataataa 423  Q
    ||||||| |||||| |||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  12637725 gttcttcaaaaatttcaaggtggtaatgatattgaccaagatatatgcttaactgacaacaatatcaaggctataatcctggtaagtataataa 12637632  T

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Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 322 - 430
Target Start/End: Complemental strand, 12610727 - 12610619
Alignment:
Q  322 tggttgacgttcttctaaaattccaaggtggaaatgataatgacaaagatatatgcttaactgacaacaacatcaaggctgtaatcctggtaagtataat 421  Q
    |||| |||||||||||||||||||||||||| ||||| |   || |||||||||| |||||||| ||||| |||||| || ||||||||||||| |||||    
T  12610727 tggtagacgttcttctaaaattccaaggtggtaatgacagcaaccaagatatatgtttaactgataacaatatcaagtctataatcctggtaaggataat 12610628  T
Q  422 aaaaccctt 430  Q
    ||| |||||    
T  12610627 aaacccctt 12610619  T

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Target: scaffold0059 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 63160 - 62894
Alignment:
Q  19 tcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaagaagagttcgcgtggttggg 118  Q
    ||||| |||||||||||||| || || ||| | || ||||| |||| | ||||||||||||  |||||||||||| ||||||| |||| ||||  |||||    
T  63160 tcaacatcactgaacttgtacttacaacaatgatttctatcatttcaagggctgcgtttggcgacaaatgcaaagcccaagaacagtttgcgtcattggg 63061  T
Q  119 gaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagagg 218  Q
     ||   || |||||||| |||||||||||| ||   |||| | ||||||||||| ||||||||||||||| | | |  |   |||||||||||| |||||    
T  63060 aaatataggatcaattggaggaggttttgaaataattgaattatttccttcagccaaatggcttcaacttatatttaatcaaaggcctaaacttaagagg 62961  T
Q  219 ttgcatagacgaattgatcatatactggaaaatatcatcattgaacataaagaagcaaagtcaaaag 285  Q
    |||||||||| | ||||||| ||||| ||||| ||| ||||| |||||||||||||||||| |||||    
T  62960 ttgcatagacaacttgatcagatacttgaaaacatcgtcattcaacataaagaagcaaagttaaaag 62894  T

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Target: scaffold0554 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 132 - 276
Target Start/End: Original strand, 5626 - 5770
Alignment:
Q  132 attgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaa 231  Q
    |||||||||||||||||| | || ||  ||||||| || ||||||||||| ||||  ||| |||||||||||||||| ||||||| | | ||| ||| ||    
T  5626 attgcaggaggttttgacttgggagatttgtttccatctgctaaatggctacaacaagttactggtttgaggcctaagcttgagatgcttcatcgacaaa 5725  T
Q  232 ttgatcatatactggaaaatatcatcattgaacataaagaagcaa 276  Q
     |||||| ||||| ||||| ||||||| ||| |||||||||||||    
T  5726 ctgatcaaatacttgaaaacatcatcaatgagcataaagaagcaa 5770  T

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Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 133 - 294
Target Start/End: Complemental strand, 23146811 - 23146647
Alignment:
Q  133 ttgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaat 232  Q
    ||||||| ||||||||| | || ||  ||||||| |||||||||||| | || |||||| ||||| |||||||||| ||||||||||| ||| ||| ||     
T  23146811 ttgcagggggttttgacttgggagatttgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaac 23146712  T
Q  233 tgatcatatactggaaaatatcatcattgaacataaagaagcaaagt---caaaagccaaagatg 294  Q
    |||||| ||| | ||||| ||||||| ||| |||||||| | |||||   |||||||||||||||    
T  23146711 tgatcagatatttgaaaacatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatg 23146647  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 160 - 294
Target Start/End: Complemental strand, 23039909 - 23039772
Alignment:
Q  160 tgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcat 259  Q
    ||||||| |||||||||||| | || |||||| ||||| |||||||||| ||||||||||| ||| ||| || |||||| ||| | ||||| |||||||     
T  23039909 tgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaactgatcagatattagaaaacatcatcaa 23039810  T
Q  260 tgaacataaagaagcaaagt---caaaagccaaagatg 294  Q
    ||| |||||||| | |||||   |||||||||||||||    
T  23039809 tgagcataaagaggaaaagtacacaaaagccaaagatg 23039772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 294
Target Start/End: Complemental strand, 23037032 - 23036895
Alignment:
Q  160 tgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcat 259  Q
    ||||||| |||||||||||||| || | | || |||||||||||||||| || |||||| | ||| ||| || |||||| ||| | ||||| |||||||     
T  23037032 tgtttccctcagctaaatggctacagcgtattactggtttgaggcctaagctggagaggattcatcgacaaactgatcagatattagaaaacatcatcaa 23036933  T
Q  260 tgaacataaagaagcaaagt---caaaagccaaagatg 294  Q
    ||| |||||||| | |||||   |||||||||||||||    
T  23036932 tgagcataaagaggaaaagtacacaaaagccaaagatg 23036895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 23033743 - 23033659
Alignment:
Q  132 attgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgaga 216  Q
    ||||||||||||||| || | || ||  ||||||||||  ||||||||||||||| |||| ||||| | |||||||| |||||||    
T  23033743 attgcaggaggttttaacttgggagatttgtttccttcttctaaatggcttcaacatgttactggtattaggcctaagcttgaga 23033659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 289
Target Start/End: Complemental strand, 23141099 - 23141003
Alignment:
Q  193 ctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcattgaacataaagaagcaaagtcaaaagccaa 289  Q
    ||||||| |||||||  ||||||||| ||||| |||   ||||||| ||| ||||||| ||||||| ||| || || || || ||||||||||||||    
T  23141099 ctggtttaaggcctacccttgagagggtgcatcgacaggttgatcagataatggaaaacatcatcagtgagcacaaggaggccaagtcaaaagccaa 23141003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 278
Target Start/End: Complemental strand, 21780799 - 21780681
Alignment:
Q  160 tgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcat 259  Q
    ||||||||||  |||||||| || ||| |||| |||| ||||||||||| |||||||| || ||  ||| || |||||| ||| | ||||| |||||||     
T  21780799 tgtttccttctactaaatggattgaacatgttactggattgaggcctaagcttgagagttttcaacgacaaactgatcagatatttgaaaacatcatcaa 21780700  T
Q  260 tgaacataaagaagcaaag 278  Q
     || |||||||| ||||||    
T  21780699 ggaccataaagaggcaaag 21780681  T

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