View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_low_21 (Length: 404)
Name: NF16754_low_21
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 10 - 389
Target Start/End: Original strand, 56097233 - 56097593
Alignment:
| Q |
10 |
attatactttaaggtatataatatatttcagtgtgcgtgtatggtagtgacagatgcatgcatgatattcatctctcttatatactactattcaaactat |
109 |
Q |
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| T |
56097233 |
attatactttaaggtatataatatatttcagtgtgcgtgtatggtagtgacagatgcatgcatgatattcatctctcttata------------------ |
56097314 |
T |
|
| Q |
110 |
ataatattttgttgagacatctttaatttagtcgaatgatcaatttgttgatatttagtatctggtctgaattcttgttttctctgtttaaacaagattt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56097315 |
-taatattttgttgagacatctttaatttagtcgaatgatcaatttgttgatattttgtatctggtctgaattcttgttttctctgtttaaacaagattt |
56097413 |
T |
|
| Q |
210 |
atttctctgtattttctttcgtccaagtgatctaccatatcaccatcgatcaatccagccacctttgttttgttgtgcaagtaaaggaaggtaacggaaa |
309 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56097414 |
atttatctgtattttctttcgtccaagtgatctaccataccaccatcgatcactccagccacctttgttttgttgtgcaagtaaaggaaggtaacggaaa |
56097513 |
T |
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| Q |
310 |
ccttgaaaaagaagatgatggcctaaatgggttgtgaattgtgattgtatattttggaatgaaacaagtgtcgtgcatgc |
389 |
Q |
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|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
56097514 |
ccatgaaaaagaagatgatggcgtaaatgggttgtgaattgtgattgtatattttggaatggaacaagtgtcgtgcatgc |
56097593 |
T |
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