View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16754_low_22 (Length: 400)

Name: NF16754_low_22
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16754_low_22
NF16754_low_22
[»] chr2 (4 HSPs)
chr2 (15-387)||(4601632-4602001)
chr2 (135-367)||(4596393-4596631)
chr2 (135-244)||(4586890-4586999)
chr2 (33-74)||(14268751-14268792)
[»] chr8 (2 HSPs)
chr8 (34-74)||(2517108-2517148)
chr8 (41-79)||(34863489-34863527)
[»] chr1 (4 HSPs)
chr1 (34-74)||(29230066-29230106)
chr1 (33-74)||(26777395-26777437)
chr1 (41-74)||(9656782-9656815)
chr1 (34-74)||(1118414-1118454)
[»] chr7 (1 HSPs)
chr7 (34-78)||(28266475-28266519)
[»] chr6 (3 HSPs)
chr6 (34-74)||(2493432-2493472)
chr6 (34-74)||(33468400-33468440)
chr6 (34-74)||(34625735-34625775)
[»] chr5 (1 HSPs)
chr5 (34-74)||(38749581-38749621)
[»] chr4 (2 HSPs)
chr4 (34-74)||(27096019-27096059)
chr4 (34-74)||(32369930-32369970)
[»] chr3 (2 HSPs)
chr3 (34-74)||(28576717-28576757)
chr3 (34-74)||(32166201-32166241)


Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 15 - 387
Target Start/End: Original strand, 4601632 - 4602001
Alignment:
Q  15 gacatcggacatgatacaaacaccggtaataatttgaaaaaatgacttaattgaatgtaaacacttgtcggacacaccaatcatgaagtgtcggtgcctg 114  Q
    ||||||||||||||||||||||  |||||||||||||||||||||  ||||||||   ||||| ||||||||||||| ||||||||||||||||||||||    
T  4601632 gacatcggacatgatacaaacatgggtaataatttgaaaaaatgaggtaattgaa---aaacatttgtcggacacactaatcatgaagtgtcggtgcctg 4601728  T
Q  115 ctacgaagctacgaaaataggttaccttgaagaaggagacaatggagcaaagattctccttgtattcatgtagaggaacatgctgaaaaccagaacatct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4601729 ctacgaagctacgaaaataggttaccttgaagaaggagacaatggagcaaagattctccttgtattcatgtagaggaacatgctgaaaaccagaacatct 4601828  T
Q  215 attaggcagacaagcatcatttgccccaaagaaaacagtcaaagcaacaggatcagtttctgttccatcactctttgacacagggaaaaccctttccaaa 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4601829 attaggcagacaagcatcatttgccccaaagaaaacagtcaaagcaacaggatcagtttctgttccatcacactttgacacagggaaaaccctttccaaa 4601928  T
Q  315 accttcaacgcccaccttgtgttgtaaccactatatcctcttagcactacatcaacctgatacacaacacaat 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4601929 accttcaacgcccaccttgtgttgtaaccactatatcctcttagcactacatcaacctgatacacaacacaat 4602001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 135 - 367
Target Start/End: Original strand, 4596393 - 4596631
Alignment:
Q  135 gttaccttgaagaaggagacaatggagcaaagattctccttgtattcatgtagaggaacatgctgaaaaccagaacatctattaggcagacaagcatcat 234  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||| |||| |||||||| || |||||||| ||||    
T  4596393 gttaccttgaagaaggagacaatggagcaaaggttctccttgtaatcatgtagagggacatgttgaaaagcagagcatctattgggaagacaagcgtcat 4596492  T
Q  235 ttgccccaaagaaaacagtcaaagcaacaggatcagtttctgttcca---tcac--tctt-tgacacagggaaaaccctttccaaaaccttcaacgccca 328  Q
    | |||||||||||||||||||||||||  ||| ||||||| ||||||   ||||   ||| ||||||||||||||||||||| || ||||||||| ||||    
T  4596493 tagccccaaagaaaacagtcaaagcaatcggagcagtttcggttccactgtcaccgccttgtgacacagggaaaaccctttctaacaccttcaacaccca 4596592  T
Q  329 ccttgtgttgtaaccactatatcctcttagcactacatc 367  Q
    ||| |||||||| |||||||| ||||| ||||| |||||    
T  4596593 cctcgtgttgtacccactataccctctgagcaccacatc 4596631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 135 - 244
Target Start/End: Original strand, 4586890 - 4586999
Alignment:
Q  135 gttaccttgaagaaggagacaatggagcaaagattctccttgtattcatgtagaggaacatgctgaaaaccagaacatctattaggcagacaagcatcat 234  Q
    |||||||| || |||||||||||||||| ||| || |||||||||||||||||||||||||| |||||| || | ||||||||||| |||||||||||||    
T  4586890 gttaccttaaaaaaggagacaatggagcgaaggttgtccttgtattcatgtagaggaacatgttgaaaaacatagcatctattaggaagacaagcatcat 4586989  T
Q  235 ttgccccaaa 244  Q
    ||||||||||    
T  4586990 ttgccccaaa 4586999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 14268792 - 14268751
Alignment:
Q  33 aacaccggtaataatttgaaaaaatgacttaattgaatgtaa 74  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  14268792 aacaccggtaataatttgagaaaatgacttaattgaacgtaa 14268751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 2517108 - 2517148
Alignment:
Q  34 acaccggtaataatttgaaaaaatgacttaattgaatgtaa 74  Q
    |||||||||||||||||| ||||||| ||||||||||||||    
T  2517108 acaccggtaataatttgagaaaatgaattaattgaatgtaa 2517148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 34863489 - 34863527
Alignment:
Q  41 taataatttgaaaaaatgacttaattgaatgtaaacact 79  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  34863489 taattatttgaaaaaatgacttaattgaatgtaatcact 34863527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 29230066 - 29230106
Alignment:
Q  34 acaccggtaataatttgaaaaaatgacttaattgaatgtaa 74  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  29230066 acaccggtaataatttgagaaaatgacataattgaatgtaa 29230106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 26777437 - 26777395
Alignment:
Q  33 aacaccggtaataatttgaaaaaa-tgacttaattgaatgtaa 74  Q
    ||||||| |||||||||||||||| ||||||||||||||||||    
T  26777437 aacaccgataataatttgaaaaaaatgacttaattgaatgtaa 26777395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 9656815 - 9656782
Alignment:
Q  41 taataatttgaaaaaatgacttaattgaatgtaa 74  Q
    ||||||||||||||||||| ||||||||||||||    
T  9656815 taataatttgaaaaaatgatttaattgaatgtaa 9656782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 1118454 - 1118414
Alignment:
Q  34 acaccggtaataatttgaaaaaatgacttaattgaatgtaa 74  Q
    |||| ||| ||||||||||||||||| ||||||||||||||    
T  1118454 acacgggtgataatttgaaaaaatgaattaattgaatgtaa 1118414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 28266475 - 28266519
Alignment:
Q  34 acaccggtaataatttgaaaaaatgacttaattgaatgtaaacac 78  Q
    |||||||||||||||||| ||||| | ||||||| ||||||||||    
T  28266475 acaccggtaataatttgagaaaataaattaattggatgtaaacac 28266519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 2493472 - 2493432
Alignment:
Q  34 acaccggtaataatttgaaaaaatgacttaattgaatgtaa 74  Q
    |||||| ||||||||||| |||||||| |||||||||||||    
T  2493472 acaccgataataatttgacaaaatgacataattgaatgtaa 2493432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 33468440 - 33468400
Alignment:
Q  34 acaccggtaataatttgaaaaaatgacttaattgaatgtaa 74  Q
    |||||| ||||||||||||||||| |||||||| |||||||    
T  33468440 acaccgctaataatttgaaaaaataacttaattcaatgtaa 33468400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 34625735 - 34625775
Alignment:
Q  34 acaccggtaataatttgaaaaaatgacttaattgaatgtaa 74  Q
    |||||| ||||||||||| ||||||| ||||||||||||||    
T  34625735 acaccgataataatttgagaaaatgaattaattgaatgtaa 34625775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 38749621 - 38749581
Alignment:
Q  34 acaccggtaataatttgaaaaaatgacttaattgaatgtaa 74  Q
    |||||| |||||||||||||||||||| ||||| |||||||    
T  38749621 acaccgataataatttgaaaaaatgacataattcaatgtaa 38749581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 27096059 - 27096019
Alignment:
Q  34 acaccggtaataatttgaaaaaatgacttaattgaatgtaa 74  Q
    |||||| ||||||||||| |||||||| |||||||||||||    
T  27096059 acaccgataataatttgacaaaatgacataattgaatgtaa 27096019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 32369970 - 32369930
Alignment:
Q  34 acaccggtaataatttgaaaaaatgacttaattgaatgtaa 74  Q
    |||||| ||||||||||| ||||||| ||||||||||||||    
T  32369970 acaccgataataatttgagaaaatgaattaattgaatgtaa 32369930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 28576717 - 28576757
Alignment:
Q  34 acaccggtaataatttgaaaaaatgacttaattgaatgtaa 74  Q
    |||||||||||||||||| ||||||||  ||||||||||||    
T  28576717 acaccggtaataatttgagaaaatgacaaaattgaatgtaa 28576757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 32166241 - 32166201
Alignment:
Q  34 acaccggtaataatttgaaaaaatgacttaattgaatgtaa 74  Q
    |||| ||||||||||||| |||||||| |||||||||||||    
T  32166241 acactggtaataatttgagaaaatgacataattgaatgtaa 32166201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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