View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_low_26 (Length: 389)
Name: NF16754_low_26
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 3563205 - 3562843
Alignment:
| Q |
18 |
ggaacaagacaattttatccttttagagtnnnnnnncaagtttattctattgtatgtcaatatgtcattctaccatattgacacattctacggattattt |
117 |
Q |
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| T |
3563205 |
ggaataagacaattttatccttttagagtaagaaaacaagtttattctattgtatgtcaatatgtcattctaccatattgacacattctacggattattt |
3563106 |
T |
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| Q |
118 |
ttggaagcaatgcaaaatagccaacacagtgaagttggaagatattatagccacacaatgaagcaattcaaatgctctctctattaattaactaatcaaa |
217 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||| |
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| T |
3563105 |
ttggaagcaatgcaaaatagcca-cacagtgaagttggaagctattatagccacacaatgaagcaatgcaaatgctctctttattaattaactaaccaaa |
3563007 |
T |
|
| Q |
218 |
tagtttcacattacttttgattgtgtgaacaatagctgctataatacttgacatgtttgctctcaacnnnnnnngtttttaatactatgggatatctatg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3563006 |
tagtttcacattacttttgattgtgtgaacaatagctgctataatacttgacatgtttgctctcaacaaaaaaagtttttaatactatgggatatctatg |
3562907 |
T |
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| Q |
318 |
ggattttatgggattttgctacttgtcatgtgaaaagtatactttaagtctaaaacagtataat |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3562906 |
ggattttatgggattttgctacttgtcatgtgaaaagtatactttaagtctaaaacaatataat |
3562843 |
T |
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