View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16754_low_29 (Length: 364)

Name: NF16754_low_29
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16754_low_29
NF16754_low_29
[»] chr1 (10 HSPs)
chr1 (18-364)||(11457812-11458159)
chr1 (144-364)||(50079158-50079380)
chr1 (144-362)||(40133661-40133877)
chr1 (144-362)||(17318615-17318835)
chr1 (280-364)||(50077009-50077093)
chr1 (280-362)||(12302850-12302932)
chr1 (248-362)||(50307886-50307997)
chr1 (144-199)||(50308018-50308074)
chr1 (144-174)||(14184114-14184144)
chr1 (309-353)||(8347618-8347661)
[»] chr5 (9 HSPs)
chr5 (144-364)||(25903825-25904047)
chr5 (144-364)||(36208301-36208524)
chr5 (212-364)||(31472948-31473098)
chr5 (212-362)||(16092541-16092692)
chr5 (144-362)||(1189952-1190151)
chr5 (280-363)||(9020082-9020165)
chr5 (219-274)||(9020041-9020097)
chr5 (235-292)||(2954308-2954366)
chr5 (226-302)||(11962821-11962898)
[»] chr6 (8 HSPs)
chr6 (144-358)||(3390135-3390352)
chr6 (144-274)||(3396098-3396231)
chr6 (144-354)||(32447661-32447872)
chr6 (212-364)||(26944976-26945127)
chr6 (294-353)||(3396230-3396289)
chr6 (145-207)||(3234179-3234242)
chr6 (236-274)||(3234132-3234170)
chr6 (227-274)||(24543081-24543129)
[»] chr2 (12 HSPs)
chr2 (144-364)||(17848814-17849037)
chr2 (144-362)||(28196337-28196555)
chr2 (280-364)||(45239316-45239400)
chr2 (280-364)||(31733100-31733184)
chr2 (219-362)||(38414367-38414508)
chr2 (147-274)||(17848161-17848298)
chr2 (280-362)||(17848283-17848363)
chr2 (219-263)||(31733180-31733225)
chr2 (212-263)||(45239396-45239448)
chr2 (144-200)||(38414506-38414564)
chr2 (309-362)||(11578442-11578494)
chr2 (144-207)||(31733216-31733281)
[»] chr3 (12 HSPs)
chr3 (186-364)||(880785-880963)
chr3 (227-363)||(6231236-6231372)
chr3 (212-363)||(3306570-3306722)
chr3 (212-363)||(51675089-51675241)
chr3 (232-364)||(3314477-3314608)
chr3 (226-364)||(53590981-53591119)
chr3 (186-364)||(31151095-31151271)
chr3 (225-364)||(890104-890243)
chr3 (226-362)||(47149236-47149390)
chr3 (144-271)||(54691979-54692108)
chr3 (138-174)||(51675260-51675296)
chr3 (144-199)||(3306521-3306578)
[»] chr4 (14 HSPs)
chr4 (144-364)||(12396180-12396402)
chr4 (222-364)||(24446914-24447052)
chr4 (144-364)||(18537806-18538026)
chr4 (212-364)||(12401142-12401295)
chr4 (280-364)||(19095796-19095880)
chr4 (212-362)||(38928515-38928664)
chr4 (212-362)||(37313402-37313549)
chr4 (144-274)||(33415889-33416016)
chr4 (212-274)||(19095748-19095811)
chr4 (316-363)||(13543904-13543951)
chr4 (280-362)||(33415824-33415904)
chr4 (325-364)||(18535164-18535203)
chr4 (212-278)||(18535220-18535287)
chr4 (201-364)||(13072307-13072469)
[»] chr8 (11 HSPs)
chr8 (212-357)||(36865384-36865530)
chr8 (222-364)||(35872713-35872851)
chr8 (247-364)||(30480838-30480954)
chr8 (158-358)||(5623079-5623280)
chr8 (144-271)||(30480965-30481093)
chr8 (212-302)||(17799830-17799922)
chr8 (253-364)||(33032381-33032491)
chr8 (226-274)||(40877978-40878026)
chr8 (144-199)||(40878033-40878089)
chr8 (144-174)||(36865334-36865364)
chr8 (256-292)||(18312620-18312656)
[»] chr7 (9 HSPs)
chr7 (144-364)||(9680545-9680768)
chr7 (144-362)||(20137446-20137665)
chr7 (280-364)||(4296271-4296355)
chr7 (144-274)||(11355013-11355145)
chr7 (212-289)||(42222939-42223016)
chr7 (316-363)||(9678960-9679007)
chr7 (259-360)||(42223007-42223106)
chr7 (144-181)||(42222891-42222928)
chr7 (311-362)||(11355161-11355210)
[»] scaffold0045 (1 HSPs)
scaffold0045 (226-285)||(85072-85131)
[»] scaffold0004 (2 HSPs)
scaffold0004 (259-362)||(79711-79810)
scaffold0004 (144-199)||(79664-79720)


Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 11458159 - 11457812
Alignment:
Q  18 aatgtttgtggttagtgatatatatttgtatggtgtttaccttcggttaaaggacataatgtattcaccaggagttaatttggtacttactgctcgagaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11458159 aatgtttgtggttagtgatatatatttgtatggtgtttaccttcggttaaaggacataatgtattcaccaggagttaatttggtacttactgctcgagaa 11458060  T
Q  118 agaaataagtaaattaaagtaagtgatgtgaaagtgacttaaaattggagaaattgagattgctaaagt-gtcaaaattggagttcgatttggagaaatc 216  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||| |||||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||    
T  11458059 agaaataagtaaattaaagtaagtgttgtgaaattgactcaaatttggagaatttgagtttgctgaagttgtcaaaattggagttcgatttggagaaatc 11457960  T
Q  217 gaagtacgatttttggagcagaattgacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaat 316  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  11457959 gaagtatgatttttggagcagaattgacactttcatttgtaaaaaattggagcacgatctagcaaaatcggagcacgatttcgcgcagaagaataaaaat 11457860  T
Q  317 aaaccgtatttttatgggtctgatttggttccaatttatgagggatgc 364  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11457859 aaaacgtatttttatgggtctgatttggttccaatttatgagggatgc 11457812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 144 - 364
Target Start/End: Complemental strand, 50079380 - 50079158
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattga-gattgctaaag-tgtcaaaattggagttcgatttggagaaatcgaagtacgatttttggagcagaatt 241  Q
    |||||||||||||  |||||| ||||||||| | ||||| ||| ||||||||| |||   |||||||||||||||| || ||||||||||||||||| ||    
T  50079380 tgtgaaagtgactccaaattgaagaaattgaagtttgctgaagctgtcaaaatcggaacccgatttggagaaatcggagcacgatttttggagcagattt 50079281  T
Q  242 gacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgatt 341  Q
    | |||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||| |||||||    
T  50079280 ggcactttcattcgtagaaaatcggagcacgatctggcaaaatcggagcacgatttcgcgctgaagaataaaaataaaacgtatttttatggatctgatt 50079181  T
Q  342 tggttccaatttatgagggatgc 364  Q
    |||||| ||||||||||||||||    
T  50079180 tggttcaaatttatgagggatgc 50079158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 144 - 362
Target Start/End: Original strand, 40133661 - 40133877
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattga-gattgctaaag-tgtcaaaattggagttcgatttggagaaatcgaagtacgatttttggagcagaatt 241  Q
    ||||||||||||| |||||| |||||||||| | ||||| ||| ||||||||| ||||  ||||||| | |||||| ||||||| |||||||||| ||||    
T  40133661 tgtgaaagtgactcaaaattagagaaattgaagtttgctgaagctgtcaaaatcggagcacgatttgaa-aaatcggagtacgacttttggagcataatt 40133759  T
Q  242 gacactttc-attcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgat 340  Q
    | ||||||| ||| ||||||||| ||||||||||||||||||||| ||| || |||| ||||| ||  ||||||||||| | | ||||    || |||||    
T  40133760 ggcactttccattggtaaaaaatcggagcacgatctggcaaaatcagagtacgattttgcgcataatcataaaaataaaacatttttt----ggcctgat 40133855  T
Q  341 ttggttccaatttatgagggat 362  Q
    || |||||||||||||||||||    
T  40133856 tttgttccaatttatgagggat 40133877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 144 - 362
Target Start/End: Original strand, 17318615 - 17318835
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattga-gattgctaaag-tgtcaaaattggagttcgatttggagaaatcgaagtacgattttt-ggagcagaat 240  Q
    ||||||||||||| ||||| ||||||||||| | ||||| ||| | |||| || ||||  ||||||| ||||||||||| || |||||| ||| ||||||    
T  17318615 tgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatatcggagcacgatttg-agaaatcgaagcacaattttttggaccagaat 17318713  T
Q  241 tgacactttc-attcgtaaaaaattggagcacgatctggcaaaatcggagcac-aatttcgcgcagaagaataaaaataaaccgtatttttatgggtctg 338  Q
    ||||| |||| ||||||||||||| |||||||||||||||||||||||||  | | ||| |||||||   ||||||||||| ||||||||||  |  |||    
T  17318714 tgacagtttccattcgtaaaaaatcggagcacgatctggcaaaatcggagtgcgatttttgcgcagagtcataaaaataaaacgtattttta--gacctg 17318811  T
Q  339 atttggttccaatttatgagggat 362  Q
    |||| |||||||||||||||||||    
T  17318812 attttgttccaatttatgagggat 17318835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 280 - 364
Target Start/End: Complemental strand, 50077093 - 50077009
Alignment:
Q  280 aaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggatgc 364  Q
    ||||||||||||| |||| |||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||    
T  50077093 aaaatcggagcacgattttgcgcagaagaataaaaataaaatgtatttttatgggcctgatttggttccaatttatgagggatgc 50077009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 280 - 362
Target Start/End: Complemental strand, 12302932 - 12302850
Alignment:
Q  280 aaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggat 362  Q
    ||||||||||||| |||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||    
T  12302932 aaaatcggagcacgatttcgtgcagaagaataaaaataaaatgtatttttatgggcctgatttggttccaatttatgagggat 12302850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 248 - 362
Target Start/End: Complemental strand, 50307997 - 50307886
Alignment:
Q  248 ttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgatttggttc 347  Q
    |||||||||||||||| | ||||||||||||||||||| ||| || |||| |||||||   | ||||||||| |   ||||| |||| ||||||| |||     
T  50307997 ttcattcgtaaaaaatcgaagcacgatctggcaaaatcagagtacgattttgcgcagattcagaaaaataaaac---tttttttgggcctgattttgtta 50307901  T
Q  348 caatttatgagggat 362  Q
    ||||||| |||||||    
T  50307900 caatttacgagggat 50307886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 50308074 - 50308018
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattgagattgctaaag-tgtcaaaattggag 199  Q
    ||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||    
T  50308074 tgtgaaagtgactcaaaattggagaaattgagtttgctgaagctgtcaaaattggag 50308018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 174
Target Start/End: Complemental strand, 14184144 - 14184114
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattga 174  Q
    |||||||||||||||||||||||||||||||    
T  14184144 tgtgaaagtgacttaaaattggagaaattga 14184114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 8347661 - 8347618
Alignment:
Q  309 ataaaaataaaccgtatttttatgggtctgatttggttccaattt 353  Q
    ||||||||||| |||||||||||||||| ||||| ||||||||||    
T  8347661 ataaaaataaaacgtatttttatgggtcagattt-gttccaattt 8347618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 144 - 364
Target Start/End: Original strand, 25903825 - 25904047
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattgagattgctaaag-tgtcaaaattggagttcgatttggagaaatcgaagtacgattttt-ggagcagaatt 241  Q
    ||||||||||| | |||||||||||||||||| ||||  ||| | ||||||||||||  |||||||||||||||| || | ||||||| |||||||||||    
T  25903825 tgtgaaagtgattcaaaattggagaaattgagtttgccgaagctatcaaaattggagcccgatttggagaaatcggagcatgatttttcggagcagaatt 25903924  T
Q  242 gacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgatt 341  Q
    |||||||| |||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || |||    
T  25903925 gacacttttattcataaaaaatcggagcacgatctggcaaaatcggagcacgatttcgcgcagaagaataaaaataaaacgtatttttatgggcctaatt 25904024  T
Q  342 tggttccaatttatgagggatgc 364  Q
    ||||| |||||||||| ||||||    
T  25904025 tggtttcaatttatgaaggatgc 25904047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 144 - 364
Target Start/End: Original strand, 36208301 - 36208524
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattga-gattgctaaag-tgtcaaaattggagttcgatttggagaaatcgaagtacgatttttggagcagaatt 241  Q
    |||||||||||||||||||||| |||||||| | ||||| ||| ||||||||| ||||  |||||| || |||| | ||||| |||||||||||| ||||    
T  36208301 tgtgaaagtgacttaaaattggtgaaattgaagtttgctgaagctgtcaaaatcggagcacgattttgaaaaattggagtacaatttttggagcaaaatt 36208400  T
Q  242 gacactttc-attcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgat 340  Q
    ||||||||| |||||||||||||  ||||||||||||||||||||||||||  |||||||||| ||||||||||||||| | |||||||||||| |||||    
T  36208401 gacactttccattcgtaaaaaatcagagcacgatctggcaaaatcggagcatgatttcgcgcaaaagaataaaaataaaacatatttttatgggcctgat 36208500  T
Q  341 ttggttccaatttatgagggatgc 364  Q
    || ||||||||||  |||||||||    
T  36208501 tttgttccaatttgcgagggatgc 36208524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 212 - 364
Target Start/End: Complemental strand, 31473098 - 31472948
Alignment:
Q  212 aaatcgaagtacgatttttggagcagaattgacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaata 311  Q
    |||||| || ||||||| ||||||||||||| ||| ||||||| |||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||    
T  31473098 aaatcggagcacgatttatggagcagaattggcacattcattcttaaaaaatcggagcacgatctggcaaagtcggagcacgatttcgcgcagaagaata 31472999  T
Q  312 aaaataaaccgtatttttatgggtctgatttggttccaatttatgagggatgc 364  Q
    ||||||||  ||||||||||||| |||||||||||||||||||||||||||||    
T  31472998 aaaataaa--gtatttttatgggcctgatttggttccaatttatgagggatgc 31472948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 212 - 362
Target Start/End: Complemental strand, 16092692 - 16092541
Alignment:
Q  212 aaatcgaagtacgatttttgga-gcagaattgacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaat 310  Q
    |||||| || ||||||||| || ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| || |||| |||||||   ||    
T  16092692 aaatcggagcacgatttttcgaagcagaattggcactttcattcgtaaaaaatcggagcacgatctggcaaaatcggagtacgatttggcgcagagtcat 16092593  T
Q  311 aaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggat 362  Q
    ||||||||| |||| ||||||||| |||||||||||||||||||||||||||    
T  16092592 aaaaataaaacgtagttttatgggcctgatttggttccaatttatgagggat 16092541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 144 - 362
Target Start/End: Complemental strand, 1190151 - 1189952
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattga-gattgctaaag-tgtcaaaattggagttcgatttggagaaatcgaagtacgattttt-ggagcagaat 240  Q
    ||||||||||||| ||||||||||||||||| | ||||| ||| ||||||||||||||  ||||||| ||||| || || ||||||||| ||||||||||    
T  1190151 tgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaattggagcacgatttg-agaaaacggagcacgattttttggagcagaat 1190053  T
Q  241 tgacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgat 340  Q
    || ||||||||||||||||||                     |||||||||| |||| | ||||||||||||||||||| |||||||||||||| |||||    
T  1190052 tggcactttcattcgtaaaaa---------------------atcggagcacgattttgggcagaagaataaaaataaaacgtatttttatgggcctgat 1189974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 280 - 363
Target Start/End: Original strand, 9020082 - 9020165
Alignment:
Q  280 aaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggatg 363  Q
    |||||||||| || |||| |||||||| |||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||    
T  9020082 aaaatcggagtacgattttgcgcagaacaataaaaataaaacatatttttatgggtctgattttgttccaatttatgagagatg 9020165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 9020041 - 9020097
Alignment:
Q  219 agtacgatttttggagcagaattgacac-tttcattcgtaaaaaattggagcacgat 274  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||| |||| |||||    
T  9020041 agtacgatttttggagcagaattgacacttttcatttgtaaaaaatcggagtacgat 9020097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 2954308 - 2954366
Alignment:
Q  235 cagaattgacactttcattcgt-aaaaaattggagcacgatctggcaaaatcggagcac 292  Q
    |||||||| ||||||||||||| |||||||  |||||| ||||||||||||||||||||    
T  2954308 cagaattggcactttcattcgtaaaaaaatctgagcacaatctggcaaaatcggagcac 2954366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 302
Target Start/End: Complemental strand, 11962898 - 11962821
Alignment:
Q  226 tttttggagcagaattgacactttcat-tcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgc 302  Q
    |||| ||| |||||||||||||||  | ||||||||||| ||||| |||||||| ||||||||||||| |||| ||||    
T  11962898 ttttgggaccagaattgacacttttctctcgtaaaaaatcggagcccgatctggaaaaatcggagcacgattttgcgc 11962821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 144 - 358
Target Start/End: Original strand, 3390135 - 3390352
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattga-gattgctaaag-tgtcaaaattggagttcgatttggagaaatcgaagtacgatttt-tggagcagaat 240  Q
    ||||||||||||| ||||||||||||||||| | || |  ||| ||||||||| ||||   ||||||||||||||| || | |||||| | |||||||||    
T  3390135 tgtgaaagtgactcaaaattggagaaattgaagtttacagaagctgtcaaaatcggagcctgatttggagaaatcggagcatgattttctagagcagaat 3390234  T
Q  241 tgacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgat 340  Q
    || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||    
T  3390235 tggcactttcaatcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaatataaaacgtatttttatgggcctgat 3390334  T
Q  341 ttggttccaatttatgag 358  Q
    ||||||||||||||||||    
T  3390335 ttggttccaatttatgag 3390352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 144 - 274
Target Start/End: Original strand, 3396098 - 3396231
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattga-gattgctaaag-tgtcaaaattggagttcgatttggagaaatcgaagtacgatttt-tggagcagaat 240  Q
    ||||||||||||| ||||||||||||||||| | ||||| ||| ||||||||| | ||  |||||||||||||||| || |||||||| |||||||||||    
T  3396098 tgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaatcgaagcccgatttggagaaatcggagcacgattttctggagcagaat 3396197  T
Q  241 tgacactttcattcgtaaaaaattggagcacgat 274  Q
    || |||||||||||||||||||| ||||||||||    
T  3396198 tggcactttcattcgtaaaaaatcggagcacgat 3396231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 144 - 354
Target Start/End: Complemental strand, 32447872 - 32447661
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattga-gattgctaaag-tgtcaaaattggagttcgatttggagaaatcgaagtacgattttt-ggagcag-aa 239  Q
    ||||||||||||| ||||||||||||||| | | ||| | ||| ||||||||  ||||| ||||||| |||||||| || | ||||||| ||||||| ||    
T  32447872 tgtgaaagtgactcaaaattggagaaatttaagtttgttgaagctgtcaaaaaaggagtacgatttg-agaaatcggagcatgattttttggagcaggaa 32447774  T
Q  240 ttgacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctga 339  Q
    ||| |||||||||||||||||||| |||||||||||||| ||||| |||| || |||| |||||||   ||||||||||| ||||||||  |||| ||||    
T  32447773 ttggcactttcattcgtaaaaaatcggagcacgatctggaaaaattggagtacgattttgcgcagagtcataaaaataaaacgtatttt--tgggcctga 32447676  T
Q  340 tttggttccaattta 354  Q
    ||| ||| |||||||    
T  32447675 ttttgtttcaattta 32447661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 212 - 364
Target Start/End: Original strand, 26944976 - 26945127
Alignment:
Q  212 aaatcgaagtacgatttttggagcagaattgacactttc-attcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaat 310  Q
    |||||| ||||||||||||  || |||||||  |||| | ||||||||||||| |||| ||||||| ||||||||| || ||||||| ||||||||| ||    
T  26944976 aaatcggagtacgatttttttagaagaattggaacttcccattcgtaaaaaatcggagtacgatctcgcaaaatcgaagtacaattttgcgcagaagcat 26945075  T
Q  311 aaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggatgc 364  Q
      |||||||   || ||||||||| ||||||| |||||||||||||||| ||||    
T  26945076 --aaataaaatataattttatgggcctgattttgttccaatttatgaggaatgc 26945127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 294 - 353
Target Start/End: Original strand, 3396230 - 3396289
Alignment:
Q  294 atttcgcgcagaagaataaaaataaaccgtatttttatgggtctgatttggttccaattt 353  Q
    |||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| |||||    
T  3396230 atttcgcgtagaagaataaaaataaaacgtatttttatggatctgatttggttctaattt 3396289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 3234242 - 3234179
Alignment:
Q  145 gtgaaagtgacttaaaattggagaaattgagattgctaaag-tgtcaaaattggagttcgattt 207  Q
    |||||||||||| |||||||||||||||||| ||||| ||| ||||||||| ||||| ||||||    
T  3234242 gtgaaagtgactcaaaattggagaaattgagtttgctgaagctgtcaaaatcggagtccgattt 3234179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 274
Target Start/End: Complemental strand, 3234170 - 3234132
Alignment:
Q  236 agaattgacactttcattcgtaaaaaattggagcacgat 274  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  3234170 agaattgacactttcattcgtaaaaaatcggagcacgat 3234132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 274
Target Start/End: Complemental strand, 24543129 - 24543081
Alignment:
Q  227 ttttggagcagaattgacactt-tcattcgtaaaaaattggagcacgat 274  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||||||    
T  24543129 ttttggaccagaattgacacttctcattcgtaaaaaattgtagcacgat 24543081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 144 - 364
Target Start/End: Original strand, 17848814 - 17849037
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattga-gattgct-aaagtgtcaaaattggagttcgatttggagaaatcgaagtacgattttt-ggagcagaat 240  Q
    ||||||||||||| ||||||||||||||||| | ||||| ||| ||||||||| | ||  ||||||||| |||||| |  ||||||||| |||| |||||    
T  17848814 tgtgaaagtgactcaaaattggagaaattgaagtttgctgaaactgtcaaaatcgaagcccgatttggaaaaatcggaacacgattttttggagaagaat 17848913  T
Q  241 tgacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgat 340  Q
    |||||||||||||||||||||||  ||||||| ||||| ||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| |||||    
T  17848914 tgacactttcattcgtaaaaaatctgagcacggtctggaaaaatcggagcacgatttcgcgcagaagaataaaaataaaacgtatttatatgggcctgat 17849013  T
Q  341 ttggttccaatttatgagggatgc 364  Q
    ||||||||||||||||||||||||    
T  17849014 ttggttccaatttatgagggatgc 17849037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 144 - 362
Target Start/End: Original strand, 28196337 - 28196555
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattga-gattgctaaag-tgtcaaaattggagttcgatttggagaaatcgaagtacgatttttgg-agcagaat 240  Q
    ||||||||||||| |||| |||||||||||| | ||||| ||| ||||||||| ||||| ||||||| ||||||||||| | | ||||| | || |||||    
T  28196337 tgtgaaagtgactcaaaaatggagaaattgaagtttgctgaagctgtcaaaatcggagtacgatttg-agaaatcgaagcatggttttttgcagaagaat 28196435  T
Q  241 tgacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgat 340  Q
    ||||||||||||| ||||||||| |||||| |||||||||||||||||| || |||| |||||||   ||||||||||| ||||||||  |||| |||||    
T  28196436 tgacactttcattagtaaaaaatcggagcatgatctggcaaaatcggagtacgattttgcgcagagtcataaaaataaaacgtatttt--tgggcctgat 28196533  T
Q  341 ttggttccaatttatgagggat 362  Q
    || |||||||||||||||||||    
T  28196534 tttgttccaatttatgagggat 28196555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 280 - 364
Target Start/End: Complemental strand, 45239400 - 45239316
Alignment:
Q  280 aaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggatgc 364  Q
    ||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||    
T  45239400 aaaatcggagcacgatttcacgcagaagaataaaaataaaacgtatttttatgggcctgatttagttccaatttatgagggatgc 45239316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 280 - 364
Target Start/End: Complemental strand, 31733184 - 31733100
Alignment:
Q  280 aaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggatgc 364  Q
    ||||||||||||| |||| | |||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  31733184 aaaatcggagcacgattttgtgcagaagagtaaaaataaaacgtatttttatgggcctgatttggttccaatttatgagggatgc 31733100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 219 - 362
Target Start/End: Complemental strand, 38414508 - 38414367
Alignment:
Q  219 agtacgatttttggagcagaattgacactttc-attcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaata 317  Q
    ||||||||||||||| |||||||| ||||||| ||||||||||||| |||||| |||||||||||||||||| || |||| ||||||||  |||||||||    
T  38414508 agtacgatttttggaccagaattggcactttccattcgtaaaaaatcggagcatgatctggcaaaatcggagtacgattt-gcgcagaatcataaaaata 38414410  T
Q  318 aaccgtatttttatgggtctgatttggttccaatttatgagggat 362  Q
    || | ||||||  |||| || |||| ||| |||||||||| ||||    
T  38414409 aatcatatttt--tgggccttattttgtttcaatttatgaaggat 38414367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 274
Target Start/End: Original strand, 17848161 - 17848298
Alignment:
Q  147 gaaagtgacttaaaattggagaaattgagattgctaaag-tgtcaaaattggagttcgatt--------tggagaaatcgaagtacgatttt-tggagca 236  Q
    |||||||||| |||||||||||||||||| ||||| ||| ||||||||| ||||  |||||        ||||||||||| || |||||||| ||  |||    
T  17848161 gaaagtgactcaaaattggagaaattgagtttgctgaagctgtcaaaatcggagcccgatttggagaaatggagaaatcggagcacgattttatgttgca 17848260  T
Q  237 gaattgacactttcattcgtaaaaaattggagcacgat 274  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  17848261 gaattggcactttcattcgtaaaaaatcggagcacgat 17848298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 362
Target Start/End: Original strand, 17848283 - 17848363
Alignment:
Q  280 aaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggat 362  Q
    ||||||||||||| |||| |||||||   | ||||||||| |||||||||  ||| ||||||| |||||||||||||||||||    
T  17848283 aaaatcggagcacgattttgcgcagagtcagaaaaataaaacgtattttt--gggcctgattttgttccaatttatgagggat 17848363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 31733225 - 31733180
Alignment:
Q  219 agtacgatttttggagcagaattgacacttt-cattcgtaaaaaat 263  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||    
T  31733225 agtacgatttttgaagcagaattgacactttccattcgtaaaaaat 31733180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 45239448 - 45239396
Alignment:
Q  212 aaatcgaagtacgattttt-ggagcagaattgacactttcattcgtaaaaaat 263  Q
    |||||| || ||||||||| |||||||||||| ||||||||||||||||||||    
T  45239448 aaatcggagcacgatttttcggagcagaattggcactttcattcgtaaaaaat 45239396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 38414564 - 38414506
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattg-agattgctaaag-tgtcaaaattggagt 200  Q
    ||||||||||||| |||||||||||||||| || ||||| ||| |||||||||||||||    
T  38414564 tgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaattggagt 38414506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 362
Target Start/End: Complemental strand, 11578494 - 11578442
Alignment:
Q  309 ataaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggat 362  Q
    ||||||||||| |||||||||| ||| ||||||| |||||||||| ||||||||    
T  11578494 ataaaaataaaacgtatttttaggggcctgattt-gttccaatttttgagggat 11578442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 31733281 - 31733216
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattg-agattgctaaag-tgtcaaaattggagttcgattt 207  Q
    ||||||||||||| |||||||||||||||| || ||| | ||| ||||||||||||||| ||||||    
T  31733281 tgtgaaagtgactcaaaattggagaaattgaagtttggtgaagctgtcaaaattggagtacgattt 31733216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 186 - 364
Target Start/End: Complemental strand, 880963 - 880785
Alignment:
Q  186 tgtcaaaattggagttcgatttggagaaatcgaagtacgatttttggagcagaattgacactttcattcgtaaaaaattggagcacgatctggcaaaatc 285  Q
    ||||||||| ||||| |||||| || |||||  || || | |||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  880963 tgtcaaaatcggagtccgatttagaaaaatcagagcacaacttttggagtagaattgacactttcattcgtaaaaaatcggagtacgatctggcaaaatc 880864  T
Q  286 ggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggatgc 364  Q
    || |||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  880863 ggcgcacgatttcgcgcagaagaataaaaataaaacgtatttttatgggcctgatttggttccaatttatgagggatgc 880785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 227 - 363
Target Start/End: Original strand, 6231236 - 6231372
Alignment:
Q  227 ttttggagcagaattgacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatt 326  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||    
T  6231236 ttttggagtagaattgacactttcattcgtaaaaaatcggagcacgatctggcaaaattggagcacgatttcgcgcagaagaataaaaataaaacgtatt 6231335  T
Q  327 tttatgggtctgatttggttccaatttatgagggatg 363  Q
    |||||||| ||||||||||||||||||||||||||||    
T  6231336 tttatgggcctgatttggttccaatttatgagggatg 6231372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 212 - 363
Target Start/End: Original strand, 3306570 - 3306722
Alignment:
Q  212 aaatcgaagtacgatttt-tggagcagaattgacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaat 310  Q
    |||||| || |||||||| ||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  3306570 aaatcggagcacgattttctggagtagaattggcactttcattcgtaaaaaatcggagcacgatctggcaaaatcggagcacgatttcgcgcagaagaat 3306669  T
Q  311 aaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggatg 363  Q
    ||||||||| | || ||||||||| ||||||||||||||||||||||| ||||    
T  3306670 aaaaataaaacatagttttatgggcctgatttggttccaatttatgagagatg 3306722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 212 - 363
Target Start/End: Complemental strand, 51675241 - 51675089
Alignment:
Q  212 aaatcgaagtacgatttt-tggagcagaattgacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaat 310  Q
    |||||| || |||||||| ||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| |||||| ||||| || ||||||||    
T  51675241 aaatcggagcacgattttctggagcagaattgtcactttgattcgtaaaaaatcggagcacgatctggcaaaatcagagcacgatttcacgtagaagaat 51675142  T
Q  311 aaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggatg 363  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  51675141 aaaaataaaacgtatttttataggtctgatttggttccaatttatgagggatg 51675089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 232 - 364
Target Start/End: Original strand, 3314477 - 3314608
Alignment:
Q  232 gagcagaattgacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttat 331  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||  ||| ||||||    
T  3314477 gagcagaattgacactttcattcgtaaaaaatcggagcacgatctggcaaaatcggagcacgatttcacgcagaagaataaaaataaaaggta-ttttat 3314575  T
Q  332 gggtctgatttggttccaatttatgagggatgc 364  Q
    ||| ||||||||| |||||||||||||||||||    
T  3314576 gggcctgatttgggtccaatttatgagggatgc 3314608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 226 - 364
Target Start/End: Original strand, 53590981 - 53591119
Alignment:
Q  226 tttttggagcagaattgacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtat 325  Q
    ||||||||||||||||||||||||||||||||||| || |||| | ||||||| ||||||||||||  |||||||||||||||||||||||||| |||||    
T  53590981 tttttggagcagaattgacactttcattcgtaaaacatcggaggatgatctggaaaaatcggagcatgatttcgcgcagaagaataaaaataaaacgtat 53591080  T
Q  326 ttttatgggtctgatttggttccaatttatgagggatgc 364  Q
    ||||||||| ||||||||||||| |||||||||| ||||    
T  53591081 ttttatgggcctgatttggttccgatttatgaggaatgc 53591119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 186 - 364
Target Start/End: Original strand, 31151095 - 31151271
Alignment:
Q  186 tgtcaaaattggagttcgatttggagaaatcgaagtacgatttttggagcagaattgacactttc-attcgtaaaaaattggagcacgatctggcaaaat 284  Q
    ||||||||| ||||| ||||||| |||||||| || ||||||||| ||||||||||| ||||| | |||||||||| || |||||| |||||||||||||    
T  31151095 tgtcaaaatcggagtacgatttg-agaaatcggagcacgatttttagagcagaattggcacttcccattcgtaaaatatcggagcatgatctggcaaaat 31151193  T
Q  285 cggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggatgc 364  Q
     |||||||||||||||||||||| ||||||||||| |  ||||||||||| || |||| ||| |||||||||||||||||    
T  31151194 tggagcacaatttcgcgcagaagcataaaaataaaac--atttttatgggccttattttgttacaatttatgagggatgc 31151271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 225 - 364
Target Start/End: Complemental strand, 890243 - 890104
Alignment:
Q  225 atttttggagcagaattgacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgta 324  Q
    |||||||||| ||||||| ||||||||||||||||||||  ||||||||| ||| ||||||  ||||| |||| ||||||||||||||||| |||  |||    
T  890243 atttttggagtagaattggcactttcattcgtaaaaaatcagagcacgatatggaaaaatcatagcacgattttgcgcagaagaataaaaacaaaatgta 890144  T
Q  325 tttttatgggtctgatttggttccaatttatgagggatgc 364  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  890143 tttttatgggcctgatttggttccaatttatgagggatgc 890104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 226 - 362
Target Start/End: Complemental strand, 47149390 - 47149236
Alignment:
Q  226 tttttggagcagaattgacactttcattcgtaaaaaatt-ggagcacgatctggcaaaatcggagcacaat-----------------ttcgcgcagaag 307  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||| ||                 ||||||||||||    
T  47149390 tttttggagcagaattgacactttcattcgtaaaaaaatcggagcacgatctggtaaaatcggagcacgatctggtacggagtacgatttcgcgcagaag 47149291  T
Q  308 aataaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggat 362  Q
    |||||||||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  47149290 aataaaaataaaacgtatttttatgggcttgatttggttccaatttatgagggat 47149236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 54692108 - 54691979
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattga-gattgctaaagt-gtcaaaattggagttcgatttggagaaatcgaagtacgatttttggagcagaatt 241  Q
    ||||||||||||||||||||||||||||||| | |||||  ||| |||||||| | ||  ||| ||| | |||||| | ||||||||||||| |||||||    
T  54692108 tgtgaaagtgacttaaaattggagaaattgaagtttgctggagttgtcaaaatcgaagcacgaattgaa-aaatcggattacgatttttggaccagaatt 54692010  T
Q  242 gacacttt-cattcgtaaaaaattggagcac 271  Q
    | |||||| |||||||||||||| |||||||    
T  54692009 ggcactttccattcgtaaaaaatcggagcac 54691979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 51675296 - 51675260
Alignment:
Q  138 aagtgatgtgaaagtgacttaaaattggagaaattga 174  Q
    ||||||||||||||||||| |||||||||||||||||    
T  51675296 aagtgatgtgaaagtgactcaaaattggagaaattga 51675260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 3306521 - 3306578
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattg-agattgctaaag-tgtcaaaattggag 199  Q
    ||||||||||||| |||||||||||||||| || ||||||||| ||||||||| ||||    
T  3306521 tgtgaaagtgactcaaaattggagaaattgaagtttgctaaagctgtcaaaatcggag 3306578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 144 - 364
Target Start/End: Complemental strand, 12396402 - 12396180
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattga-gattgctaaag-tgtcaaaattggagttcgatttggagaaatcgaagtacgatttttg-gagcagaat 240  Q
    ||||||||| ||| ||||||||||||||| | | ||||| ||| ||||||||| ||||  ||||||| |||||||| ||||||||||||  |||||||||    
T  12396402 tgtgaaagttactcaaaattggagaaattcaagtttgctgaagctgtcaaaatcggagcccgatttg-agaaatcggagtacgattttttagagcagaat 12396304  T
Q  241 tgacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgat 340  Q
    || |||||||||||||||| |||| | ||||||||| | |||||| |||||| | |||| ||||||||||||||||||| |||||||||||| | |||||    
T  12396303 tggcactttcattcgtaaataattagggcacgatctagaaaaatcagagcacgaattcgtgcagaagaataaaaataaaacgtatttttatgagcctgat 12396204  T
Q  341 ttggttccaatttatgagggatgc 364  Q
    ||||||||| ||||||||||||||    
T  12396203 ttggttccagtttatgagggatgc 12396180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 222 - 364
Target Start/End: Complemental strand, 24447052 - 24446914
Alignment:
Q  222 acgattttt-ggagcagaattgacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaac 320  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||     ||||||||||||||||| ||||||||||||||||||||||||||     
T  24447052 acgatttttcggagcagaattgacactttcattcgtaaaaaatcggagca-----tggcaaaatcggagcacgatttcgcgcagaagaataaaaataaaa 24446958  T
Q  321 cgtatttttatgggtctgatttggttccaatttatgagggatgc 364  Q
    | ||||||||||||  ||||||||||||||||||||||||||||    
T  24446957 catatttttatgggcatgatttggttccaatttatgagggatgc 24446914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 144 - 364
Target Start/End: Complemental strand, 18538026 - 18537806
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattgagattgctaaag-tgtcaaaattggagttcgatttggagaaatcgaagtacgatttttggagcagaattg 242  Q
    ||||||||||||| ||||||| |||||||||  || || ||| ||||||||| ||| | ||||||| | |||||| |||||||||||| |||||||||||    
T  18538026 tgtgaaagtgactcaaaattgaagaaattgaagtt-ctgaagctgtcaaaatcggaatacgatttgaa-aaatcggagtacgatttttagagcagaattg 18537929  T
Q  243 acactttca-ttcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgatt 341  Q
     ||||| || ||||||||||||   |||||||||| |||||||||||| || |||| |||| |||| ||||||||||| ||||||||||||||  |||||    
T  18537928 gcacttccaattcgtaaaaaatcaaagcacgatctagcaaaatcggagtacgattttgcgcggaagcataaaaataaaacgtatttttatgggcatgatt 18537829  T
Q  342 tggttccaatttatgagggatgc 364  Q
    | ||||||||||||||| |||||    
T  18537828 ttgttccaatttatgagtgatgc 18537806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 212 - 364
Target Start/End: Complemental strand, 12401295 - 12401142
Alignment:
Q  212 aaatcgaagtacgatttttg-gagcagaattgacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaat 310  Q
    |||||| ||||||||||||  ||||||||||| |||||||||||||||| |||| | ||||||||| | |||||| |||||| | |||| ||||||||||    
T  12401295 aaatcggagtacgattttttagagcagaattggcactttcattcgtaaataattagggcacgatctagaaaaatcagagcacgaattcgtgcagaagaat 12401196  T
Q  311 aaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggatgc 364  Q
    ||||||||| |||||||||||| | |||||||||||||| ||||||||||||||    
T  12401195 aaaaataaaacgtatttttatgagcctgatttggttccagtttatgagggatgc 12401142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 280 - 364
Target Start/End: Original strand, 19095796 - 19095880
Alignment:
Q  280 aaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggatgc 364  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  19095796 aaaatcggagcacgatttcgcggagaagaataaaaataaaacgtatttttatgggcctgatttggttccaatttatgagggatgc 19095880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 212 - 362
Target Start/End: Complemental strand, 38928664 - 38928515
Alignment:
Q  212 aaatcgaagtacgattt-ttggagcagaattgacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaat 310  Q
    |||||| || ||||||| |||||||||||||| ||||||||||| |||| ||| | ||||||||||||||||||||||| || |||| |||||||   |     
T  38928664 aaatcggagcacgatttcttggagcagaattggcactttcattcataaataatcgaagcacgatctggcaaaatcggagtacgattttgcgcagattcag 38928565  T
Q  311 aaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggat 362  Q
    ||||||||| ||||||||  |||| ||||||| |||||||||||||||||||    
T  38928564 aaaaataaaacgtatttt--tgggcctgattttgttccaatttatgagggat 38928515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 212 - 362
Target Start/End: Complemental strand, 37313549 - 37313402
Alignment:
Q  212 aaatcgaagtacgatttttggagcagaattgacactttc-attcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaat 310  Q
    |||||| |||||||||||||||| ||||||||||||||| ||||||||||  | ||||||||||||||||||||||||| || |||| ||| ||||  ||    
T  37313549 aaatcggagtacgatttttggagaagaattgacactttccattcgtaaaa--tcggagcacgatctggcaaaatcggagtacgattttgcgtagaatcat 37313452  T
Q  311 aaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggat 362  Q
    ||||||||| ||||| ||  |||| ||||||| ||| |||||| ||||||||    
T  37313451 aaaaataaaacgtatctt--tgggcctgattttgtttcaatttttgagggat 37313402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 144 - 274
Target Start/End: Complemental strand, 33416016 - 33415889
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattgagatt-gctaaagtgtcaaaattggagttcgatttggagaaatcgaagtacgattttt-ggagcagaatt 241  Q
    ||||||||||||| ||||||||||||||||| ||| |||     |||||||||||||  |||||||||||||||| || ||||||||| |||||||||||    
T  33416016 tgtgaaagtgactcaaaattggagaaattgaaatttgct-----gtcaaaattggagcccgatttggagaaatcggagcacgattttttggagcagaatt 33415922  T
Q  242 gacactttcattcgtaaaaaattggagcacgat 274  Q
    | |||||| ||||||||||||| ||||||||||    
T  33415921 ggcactttaattcgtaaaaaatcggagcacgat 33415889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 19095748 - 19095811
Alignment:
Q  212 aaatcgaagtacgatttttggagcagaattgacacttt-cattcgtaaaaaattggagcacgat 274  Q
    |||||| || |||| ||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  19095748 aaatcggagcacgacttttggagcagaattgacactttccattcgtaaaaaatcggagcacgat 19095811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 13543904 - 13543951
Alignment:
Q  316 taaaccgtatttttatgggtctgatttggttccaatttatgagggatg 363  Q
    |||| ||||||||||||||| |||||||||| ||||||||||||||||    
T  13543904 taaaacgtatttttatgggtttgatttggtttcaatttatgagggatg 13543951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 362
Target Start/End: Complemental strand, 33415904 - 33415824
Alignment:
Q  280 aaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggat 362  Q
    ||||||||||||| |||| |||||||   | ||||||||| |||||||||  ||| ||||||| |||||||||||||||||||    
T  33415904 aaaatcggagcacgattttgcgcagagtcagaaaaataaaacgtattttt--gggcctgattttgttccaatttatgagggat 33415824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 325 - 364
Target Start/End: Complemental strand, 18535203 - 18535164
Alignment:
Q  325 tttttatgggtctgatttggttccaatttatgagggatgc 364  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  18535203 tttttatgggcctgattttgttccaatttatgagggatgc 18535164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 18535287 - 18535220
Alignment:
Q  212 aaatcgaagtacgatttttggagcagaattgacactttc-attcgtaaaaaattggagcacgatctgg 278  Q
    |||||| |||||||||||| ||| ||||||| ||||| | ||||||||||| | ||||||||||||||    
T  18535287 aaatcggagtacgatttttagagtagaattggcacttcccattcgtaaaaagtcggagcacgatctgg 18535220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 364
Target Start/End: Complemental strand, 13072469 - 13072307
Alignment:
Q  201 tcgatttggagaaatcgaagtacgatttttggagcagaattgacactttcatt-cgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcg 299  Q
    ||||||| || |||||  ||||||||||||| | |||||||||||||||| |  |||||||||| ||||  |||||||  ||||||||||||| ||||      
T  13072469 tcgatttagaaaaatcagagtacgatttttg-atcagaattgacactttcctcacgtaaaaaatcggagtccgatctgaaaaaatcggagcacgattttt 13072371  T
Q  300 cgcaga-agaataaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggatgc 364  Q
    ||| || |||  ||||| ||| ||||||||  ||||  |||||| |||||  ||||||||||||||    
T  13072370 cgctgatagagaaaaaacaaatcgtatttt--tgggcttgattttgttcctttttatgagggatgc 13072307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 212 - 357
Target Start/End: Original strand, 36865384 - 36865530
Alignment:
Q  212 aaatcgaagtacgatttttggagcagaattgacactttc-attcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaat 310  Q
    |||||| |||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| ||||||||||| ||||||| |||||||| ||||||||    
T  36865384 aaatcggagtacgatttttggagcagaattggcactttccattcgtaaaaaatcggagcacggtctggcaaaattggagcacgatttcgcgaagaagaat 36865483  T
Q  311 aaaaataaaccgtatttttatgggtctgatttggttccaatttatga 357  Q
    ||||||||| ||||||||||||||  ||||||| |||||||||||||    
T  36865484 aaaaataaaacgtatttttatgggcttgatttgtttccaatttatga 36865530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 222 - 364
Target Start/End: Complemental strand, 35872851 - 35872713
Alignment:
Q  222 acgattttt-ggagcagaattgacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaac 320  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||     ||||||||||||||||| ||||||||||||||||||||||||||     
T  35872851 acgatttttcggagcagaattgacactttcattcgtaaaaaatcggagca-----tggcaaaatcggagcacgatttcgcgcagaagaataaaaataaaa 35872757  T
Q  321 cgtatttttatgggtctgatttggttccaatttatgagggatgc 364  Q
    | ||||||||||||  ||||||||||||||||||||||||||||    
T  35872756 catatttttatgggcatgatttggttccaatttatgagggatgc 35872713  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 247 - 364
Target Start/End: Complemental strand, 30480954 - 30480838
Alignment:
Q  247 tttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgatttggtt 346  Q
    ||||||||||||||||| | ||||| |||||||||| ||  ||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||||    
T  30480954 tttcattcgtaaaaaatcgaagcacaatctggcaaa-tcaaagcacgatttcgcgcagaagaataaaaataaaacgtatttttatgggcttgatttggtt 30480856  T
Q  347 ccaatttatgagggatgc 364  Q
    ||||||||||||||||||    
T  30480855 ccaatttatgagggatgc 30480838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 158 - 358
Target Start/End: Complemental strand, 5623280 - 5623079
Alignment:
Q  158 aaaattggagaaattga-gattgctaaag-tgtcaaaattggagttcgatttggagaaatcgaagtacgattt-ttggagcagaattgacactttcattc 254  Q
    ||||||||||||||| | | ||||| ||| ||||||||| ||||  |||||||||||||||| || ||||||| |||||||||||||| |||||||||||    
T  5623280 aaaattggagaaattaaagtttgctgaagctgtcaaaatcggagcccgatttggagaaatcggagcacgatttattggagcagaattggcactttcattc 5623181  T
Q  255 gtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgatttggttccaattta 354  Q
    ||| ||||| ||||||||||||||||||||||||| || |||| |||||||   |  |||||||| | ||||||  |||| || |||| |||||||||||    
T  5623180 gtacaaaatcggagcacgatctggcaaaatcggagtacgattttgcgcagagtcagcaaaataaaacatatttt--tgggcctaattttgttccaattta 5623083  T
Q  355 tgag 358  Q
    ||||    
T  5623082 tgag 5623079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 30481093 - 30480965
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattg-agattgctaaag-tgtcaaaattggagttcgatttggagaaatcgaagtacgatttttggagcagaatt 241  Q
    ||||||||||||| |||||||||||||||| || ||||| ||| ||||||||| ||||  |||||| || |||||| ||||||| |||||||||| ||||    
T  30481093 tgtgaaagtgactcaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgattt-gaaaaatcggagtacga-ttttggagcacaatt 30480996  T
Q  242 gac-actttcattcgtaaaaaattggagcac 271  Q
    | | | ||||||||||||||||| |||||||    
T  30480995 ggcaattttcattcgtaaaaaatcggagcac 30480965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 212 - 302
Target Start/End: Complemental strand, 17799922 - 17799830
Alignment:
Q  212 aaatcgaagtacgatttttgg-agcagaattgacactttcattc-gtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgc 302  Q
    ||||||||||||||||||||| | |||||||||||||||| | | |||||||||  |||  |||||||| ||||||||||||| |||| ||||    
T  17799922 aaatcgaagtacgatttttgggaccagaattgacactttcctcccgtaaaaaatcagagtccgatctggaaaaatcggagcacgattttgcgc 17799830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 364
Target Start/End: Original strand, 33032381 - 33032491
Alignment:
Q  253 tcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaag-aataaaaataaaccgtatttttatgggtctgatttggttccaat 351  Q
    ||||||||||| ||||| |||||||| ||||||||||||| |||| |||| || | |  ||||| | | ||||||||  |||||||||||| |||||  |    
T  33032381 tcgtaaaaaatcggagcccgatctggaaaaatcggagcacgattttgcgctgatgcagaaaaaacagatcgtatttt--tgggtctgattttgttccttt 33032478  T
Q  352 ttatgagggatgc 364  Q
    |||||||||||||    
T  33032479 ttatgagggatgc 33032491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 40878026 - 40877978
Alignment:
Q  226 tttttggagcagaattgacactttcattcgtaaaaaattggagcacgat 274  Q
    |||||| |||||||||| |||||||||||||||||||| |||| |||||    
T  40878026 tttttgaagcagaattggcactttcattcgtaaaaaatcggagtacgat 40877978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 40878089 - 40878033
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattgagattgctaaag-tgtcaaaattggag 199  Q
    ||||||||||||| |||||||||||||||||| ||||| ||| ||||||||| ||||    
T  40878089 tgtgaaagtgactcaaaattggagaaattgagtttgctgaagctgtcaaaatcggag 40878033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 174
Target Start/End: Original strand, 36865334 - 36865364
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattga 174  Q
    |||||||||||||||||||||||||||||||    
T  36865334 tgtgaaagtgacttaaaattggagaaattga 36865364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 18312656 - 18312620
Alignment:
Q  256 taaaaaattggagcacgatctggcaaaatcggagcac 292  Q
    |||||||| |||| |||||||||||||||||||||||    
T  18312656 taaaaaatcggagtacgatctggcaaaatcggagcac 18312620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 144 - 364
Target Start/End: Original strand, 9680545 - 9680768
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattgagattgctaaag-tgtcaaaattggagttc-gatttggagaaatcgaagtacgatttt-tggagcagaat 240  Q
    ||||||||||||| ||||||||||||||| || ||||| ||| ||||||||| ||||  | ||||||||||||||  || | |||||| ||  |||||||    
T  9680545 tgtgaaagtgactcaaaattggagaaattaagtttgctgaagctgtcaaaatcggaggcccgatttggagaaatcagagcatgattttatgttgcagaat 9680644  T
Q  241 tgacactttcattcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgat 340  Q
     | |||||||||||| ||||||||||||||||||||| ||||||||||| || |||| |||||||   | |||||||||  ||||||||||||| |||||    
T  9680645 gggcactttcattcgaaaaaaattggagcacgatctgacaaaatcggagtacgattttgcgcagattcagaaaaataaaatgtatttttatgggcctgat 9680744  T
Q  341 ttggttccaatttatgagggatgc 364  Q
    ||||||||||||||||||||||||    
T  9680745 ttggttccaatttatgagggatgc 9680768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 144 - 362
Target Start/End: Complemental strand, 20137665 - 20137446
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattga-gattgctaaag-tgtcaaaattggagttcgatttggagaaatcgaagtacgatttttggagcagaatt 241  Q
    ||||||||||||| ||||||||||||||||| | ||||| ||| ||| | ||| ||||  ||||||| | |||||| ||||||||||| |||||||||||    
T  20137665 tgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgttataatcggagcacgatttgaaaaaatcggagtacgattttcggagcagaatt 20137566  T
Q  242 gacactttc-attcgtaaaaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgat 340  Q
    | ||||||| ||||||||||||| | ||||||||||||||||||||||| || |||| ||||| ||  ||||||||||| ||||||||  |||| |||||    
T  20137565 ggcactttccattcgtaaaaaatcgaagcacgatctggcaaaatcggagtacgattttgcgcaaaatcataaaaataaaacgtatttt--tgggcctgat 20137468  T
Q  341 ttggttccaatttatgagggat 362  Q
    || |||||||||||||||||||    
T  20137467 tttgttccaatttatgagggat 20137446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 280 - 364
Target Start/End: Complemental strand, 4296355 - 4296271
Alignment:
Q  280 aaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggatgc 364  Q
    ||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  4296355 aaaatcggagcacgattttgcgcagaagaataaaaataaaacgtatttttatgggcctgatttggatccaatttatgagggatgc 4296271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 144 - 274
Target Start/End: Original strand, 11355013 - 11355145
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattgagattgctaaag-tgtcaaaattggagttcgatttggagaaatcgaagtacgatttt-tggagcagaatt 241  Q
    ||||||||||||| ||||||| |||||||||| ||||| ||| ||||||||| ||||  ||||||||||||||||||| |||||||| ||  ||| ||||    
T  11355013 tgtgaaagtgactcaaaattgaagaaattgagtttgctgaagctgtcaaaatcggagcccgatttggagaaatcgaagcacgattttatgttgcataatt 11355112  T
Q  242 gacactttcattcgtaaaaaattggagcacgat 274  Q
    | |||||||||||||||||||| ||||||||||    
T  11355113 ggcactttcattcgtaaaaaatcggagcacgat 11355145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 212 - 289
Target Start/End: Original strand, 42222939 - 42223016
Alignment:
Q  212 aaatcgaagtacgatttttggagcagaattgacactttcattcgtaaaaaattggagcacgatctggcaaaatcggag 289  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  42222939 aaatcggagcacgatttttggagcagaattgacactttcattcgtaaaaaatcagagcacgatctggcaaaatcggag 42223016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 9678960 - 9679007
Alignment:
Q  316 taaaccgtatttttatgggtctgatttggttccaatttatgagggatg 363  Q
    |||| ||||||||||||||| |||||||||| ||||||||||||||||    
T  9678960 taaaacgtatttttatgggtttgatttggtttcaatttatgagggatg 9679007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 360
Target Start/End: Original strand, 42223007 - 42223106
Alignment:
Q  259 aaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgatttggttccaatttatgag 358  Q
    ||||| |||| ||||| |||||||||||||| || |||| ||| |||   | ||||||||| ||||||||  |||| ||||||| |||||||||||||||    
T  42223007 aaaatcggagtacgatatggcaaaatcggagtacgattttgcgtagattcagaaaaataaaacgtatttt--tgggcctgattttgttccaatttatgag 42223104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 42222891 - 42222928
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattgagattgct 181  Q
    |||||||||||||||||||||||||||||||| |||||    
T  42222891 tgtgaaagtgacttaaaattggagaaattgagtttgct 42222928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 11355161 - 11355210
Alignment:
Q  311 aaaaataaaccgtatttttatgggtctgatttggttccaatttatgagggat 362  Q
    ||||||||| |||||||||  ||| ||||||| |||||||||||||||||||    
T  11355161 aaaaataaaacgtattttt--gggcctgattttgttccaatttatgagggat 11355210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 85072 - 85131
Alignment:
Q  226 tttttggagcagaattgacactttcattcgtaaaaaattggagcacgatctggcaaaatc 285  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||    
T  85072 tttttggagcagaattgacactttcattcgtaaaaaatcggaacacgatctagcaaaatc 85131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 362
Target Start/End: Original strand, 79711 - 79810
Alignment:
Q  259 aaaattggagcacgatctggcaaaatcggagcacaatttcgcgcagaagaataaaaataaaccgtatttttatgggtctgatttggttccaatttatgag 358  Q
    ||||| ||||||||||||||||||||||||||||  ||| ||| ||    | ||||||||| ||||||||  |||| ||||||| |||||||||||||||    
T  79711 aaaatcggagcacgatctggcaaaatcggagcacggtttagcgtag--tcagaaaaataaaacgtatttt--tgggcctgattttgttccaatttatgag 79806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 79664 - 79720
Alignment:
Q  144 tgtgaaagtgacttaaaattggagaaattgagattgctaaag-tgtcaaaattggag 199  Q
    ||||||||||||| |||||||||||||||||| ||||| ||| ||||||||| ||||    
T  79664 tgtgaaagtgactcaaaattggagaaattgagtttgctgaagctgtcaaaatcggag 79720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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