View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_low_3 (Length: 586)
Name: NF16754_low_3
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 3 - 319
Target Start/End: Original strand, 3946729 - 3947033
Alignment:
| Q |
3 |
atctttaacgataataataatctctactattttataaaaagaaatcttcaaagctaactaatattaattattcattttgattgtaattttcatggataaa |
102 |
Q |
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| T |
3946729 |
atctttaacgataataataatctctactattttataaaaagaaatcttcaaagctaactaatattaattattcattttgattgtaattttcatggataaa |
3946828 |
T |
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| Q |
103 |
tttatctttaataacctagacacttcaannnnnnnaactcttatttaacatcttattttatctatatctctcttcctattacattaagtattggtaaaaa |
202 |
Q |
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| T |
3946829 |
tttatctttaataacctagacacttcaat-----------ttttttaac-tcttattttatctatatctctcttcctattacattaagtattggtaaaaa |
3946916 |
T |
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| Q |
203 |
gatatcattatcagtgcgttagacctaaaaaatgaacgtgaatttctttttaccgtgactacaaacattcaaacgggaccttgaagtgcagatccatgtg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3946917 |
gatatcattatcagtgcgttagacctaaaaaatgaacgtgaatttctttttaccgtgactacaaacattcaaacgggaccttgaagtgcagatccatgtg |
3947016 |
T |
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| Q |
303 |
ttggcagctcagcttct |
319 |
Q |
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| T |
3947017 |
ttggcagctcagcttct |
3947033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 356 - 570
Target Start/End: Original strand, 3947070 - 3947287
Alignment:
| Q |
356 |
cacaacgaggaacatatggattttgtagtattccaagggatcttctatttctttgaactccccatcattattcttttgcagttcaatattctattttaaa |
455 |
Q |
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| T |
3947070 |
cacaacgaggaacatatggattttgtagtattccaagggatcttctatttctttgaactccccatcattattcttttgcagttcaatattctattttaaa |
3947169 |
T |
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| Q |
456 |
ccttgattttagttagtaaaatactacagttata--actactatatgccttttctattttaattattaagagtgtacaatctttac-aaaaaagaaaaga |
552 |
Q |
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| T |
3947170 |
ccttgattttagttagtaaaatactacagttataatactactatatgccttttctattttaattattaagagtgtacaatctttacaaaaaaagaaaaaa |
3947269 |
T |
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| Q |
553 |
agtgtagggtacaaggtg |
570 |
Q |
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|||||||||||||||||| |
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| T |
3947270 |
agtgtagggtacaaggtg |
3947287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 143 - 171
Target Start/End: Complemental strand, 22291274 - 22291246
Alignment:
| Q |
143 |
ttatttaacatcttattttatctatatct |
171 |
Q |
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| T |
22291274 |
ttatttaacatcttattttatctatatct |
22291246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 177
Target Start/End: Complemental strand, 35414942 - 35414914
Alignment:
| Q |
149 |
aacatcttattttatctatatctctcttc |
177 |
Q |
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| T |
35414942 |
aacatcttattttatctatatctctcttc |
35414914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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